Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1587
         (747 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97053-6|CAI19686.1|  342|Homo sapiens chromosome 20 open readin...    43   0.001
BC003071-1|AAH03071.2|  342|Homo sapiens chromosome 20 open read...    43   0.001
AL132772-9|CAI18861.1|  342|Homo sapiens chromosome 20 open read...    43   0.001

>Z97053-6|CAI19686.1|  342|Homo sapiens chromosome 20 open reading
           frame 121 protein.
          Length = 342

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +1

Query: 286 PNKFVYQDAVRAFTMIVD-LWQYEEGTVPGIVIILNMKDVSLGHISQIDLIVAQQFFYYL 462
           P+ +   + +RA  + ++ L Q EE  V GIVI+ + K VSL   S     +A++    L
Sbjct: 153 PSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIGIL 212

Query: 463 QESMIVKLKEFHFIND 510
           Q+   +++K  H +N+
Sbjct: 213 QDGFPIRIKAVHVVNE 228


>BC003071-1|AAH03071.2|  342|Homo sapiens chromosome 20 open reading
           frame 121 protein.
          Length = 342

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +1

Query: 286 PNKFVYQDAVRAFTMIVD-LWQYEEGTVPGIVIILNMKDVSLGHISQIDLIVAQQFFYYL 462
           P+ +   + +RA  + ++ L Q EE  V GIVI+ + K VSL   S     +A++    L
Sbjct: 153 PSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIGIL 212

Query: 463 QESMIVKLKEFHFIND 510
           Q+   +++K  H +N+
Sbjct: 213 QDGFPIRIKAVHVVNE 228


>AL132772-9|CAI18861.1|  342|Homo sapiens chromosome 20 open reading
           frame 121 protein.
          Length = 342

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +1

Query: 286 PNKFVYQDAVRAFTMIVD-LWQYEEGTVPGIVIILNMKDVSLGHISQIDLIVAQQFFYYL 462
           P+ +   + +RA  + ++ L Q EE  V GIVI+ + K VSL   S     +A++    L
Sbjct: 153 PSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIGIL 212

Query: 463 QESMIVKLKEFHFIND 510
           Q+   +++K  H +N+
Sbjct: 213 QDGFPIRIKAVHVVNE 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,638,029
Number of Sequences: 237096
Number of extensions: 1883657
Number of successful extensions: 2828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2828
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)