BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1587 (747 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g20970.1 68415.m02481 hypothetical protein 31 1.1 At3g25020.1 68416.m03127 disease resistance family protein conta... 30 1.4 At4g38760.1 68417.m05489 hypothetical protein KIAA0169 gene, Hom... 29 3.3 At3g25010.1 68416.m03126 disease resistance family protein conta... 29 3.3 At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5' ... 29 4.3 At1g30360.1 68414.m03712 early-responsive to dehydration stress ... 28 7.6 At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end... 27 10.0 At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,... 27 10.0 At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,... 27 10.0 >At2g20970.1 68415.m02481 hypothetical protein Length = 373 Score = 30.7 bits (66), Expect = 1.1 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +3 Query: 39 NYLNHIKYCIVVRKCNMTIEAISVQYEYKKHVNIRQEMVEN 161 NY+N YC + C M + A+S + E ++ V +E+VE+ Sbjct: 144 NYINRSSYCFSIISCFMLMYAVS-EGEVREQVEKMKELVED 183 >At3g25020.1 68416.m03127 disease resistance family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593 Length = 890 Score = 30.3 bits (65), Expect = 1.4 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%) Frame = -1 Query: 465 LQIIKELLSNNQIYLRNVSK*YVFHVQYNHYSGY----SSLFVL 346 L + K L+ + ++RN+ K V V YNH+SG SSLF L Sbjct: 152 LDLSKNELTGSLSFVRNLRKLRVLDVSYNHFSGILNPNSSLFEL 195 >At4g38760.1 68417.m05489 hypothetical protein KIAA0169 gene, Homo sapiens, D79991 Length = 561 Score = 29.1 bits (62), Expect = 3.3 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -1 Query: 153 PFLVLYSHVSYIHIELRSLRLSYYTFLQQYSI 58 PFL+ HVSY+H + LSY+ + Q ++ Sbjct: 255 PFLMDIDHVSYVHQAFEAASLSYFLEILQSNL 286 >At3g25010.1 68416.m03126 disease resistance family protein contains leucine rich-repeat (LRR) domains (23 copies) Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D [Lycopersicon esculentum] gi|3894393|gb|AAC78596 Length = 881 Score = 29.1 bits (62), Expect = 3.3 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Frame = -1 Query: 444 LSNNQIYLRNVSK*YVFHVQYNHYSGY----SSLFVLP*VHYHCESSN 313 L+ + ++RN+ K V V YNH+SG SSLF L + Y SN Sbjct: 159 LTGSLSFVRNLRKLRVLDVSYNHFSGILNPNSSLFELHHLTYLSLGSN 206 >At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5' fragment contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611 (19 copies); contains similarity to GB:AAD13301 from [Lycopersicon esculentum] Length = 681 Score = 28.7 bits (61), Expect = 4.3 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 9/60 (15%) Frame = -1 Query: 483 FHYHTFLQIIKELLSNNQI-----YLRNVSK*YVFHVQYNHYSGY----SSLFVLP*VHY 331 F + + +LSNN + + RN+ K V V YNH+SG SSLF L + Y Sbjct: 172 FSFSNLSMLSALVLSNNDLTGSLSFARNLRKLRVLDVSYNHFSGILNPNSSLFELHHIIY 231 >At1g30360.1 68414.m03712 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221 Length = 724 Score = 27.9 bits (59), Expect = 7.6 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 656 DPSTFFWQCVNRKVFFNCLRTRFVYF 579 +P WQ +N K+F +R F+YF Sbjct: 343 EPRQLLWQNLNIKLFSRIIRQYFIYF 368 >At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein endo-1,4-beta-glucanase precursor - Fragariax ananassa, PID:g3549291 A short intron was annotated between exons 4 and 5 to circumvent a frameshift. The frameshift may be artificial due to a sequencing error, or alternatively is genuine suggesting a truncated protein or pseudogene. Length = 495 Score = 27.5 bits (58), Expect = 10.0 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 369 RNSDYIEHERRITWTHFSNRFDCCSTILLLSAGKYDSETKRVSFH 503 + S Y+ E+R+TW H S D + + L G YD+ + FH Sbjct: 38 QRSGYLPREQRMTWRHNSALNDGKNLNVDLVGGYYDA-GDNIKFH 81 >At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein, putative contains similarity to SWISS-PROT:Q9UFF9 CCR4-NOT transcription complex, subunit 8 (CAF1-like protein, CALIFp) [Human] Length = 302 Score = 27.5 bits (58), Expect = 10.0 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 387 EHERRITWTHFSNRFDCCSTILLLSAGKYDSETKRVSFH 503 E + +ITW +F +D + L+ GK ETK FH Sbjct: 130 EKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKE-EFH 167 >At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein, putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT transcription complex, subunit 8 (CAF1-like protein, CALIFp) [Homo sapiens] Length = 310 Score = 27.5 bits (58), Expect = 10.0 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 387 EHERRITWTHFSNRFDCCSTILLLSAGKYDSETKRVSFH 503 E + +ITW +F +D + L+ GK ETK FH Sbjct: 135 EKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKE-EFH 172 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,886,816 Number of Sequences: 28952 Number of extensions: 288838 Number of successful extensions: 636 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 627 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 636 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1653386488 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -