Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1587
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20970.1 68415.m02481 hypothetical protein                          31   1.1  
At3g25020.1 68416.m03127 disease resistance family protein conta...    30   1.4  
At4g38760.1 68417.m05489 hypothetical protein KIAA0169 gene, Hom...    29   3.3  
At3g25010.1 68416.m03126 disease resistance family protein conta...    29   3.3  
At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5' ...    29   4.3  
At1g30360.1 68414.m03712 early-responsive to dehydration stress ...    28   7.6  
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end...    27   10.0 
At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,...    27   10.0 
At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,...    27   10.0 

>At2g20970.1 68415.m02481 hypothetical protein
          Length = 373

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 39  NYLNHIKYCIVVRKCNMTIEAISVQYEYKKHVNIRQEMVEN 161
           NY+N   YC  +  C M + A+S + E ++ V   +E+VE+
Sbjct: 144 NYINRSSYCFSIISCFMLMYAVS-EGEVREQVEKMKELVED 183


>At3g25020.1 68416.m03127 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 890

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = -1

Query: 465 LQIIKELLSNNQIYLRNVSK*YVFHVQYNHYSGY----SSLFVL 346
           L + K  L+ +  ++RN+ K  V  V YNH+SG     SSLF L
Sbjct: 152 LDLSKNELTGSLSFVRNLRKLRVLDVSYNHFSGILNPNSSLFEL 195


>At4g38760.1 68417.m05489 hypothetical protein KIAA0169 gene, Homo
           sapiens, D79991
          Length = 561

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 153 PFLVLYSHVSYIHIELRSLRLSYYTFLQQYSI 58
           PFL+   HVSY+H    +  LSY+  + Q ++
Sbjct: 255 PFLMDIDHVSYVHQAFEAASLSYFLEILQSNL 286


>At3g25010.1 68416.m03126 disease resistance family protein contains
           leucine rich-repeat (LRR) domains (23 copies)
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 881

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -1

Query: 444 LSNNQIYLRNVSK*YVFHVQYNHYSGY----SSLFVLP*VHYHCESSN 313
           L+ +  ++RN+ K  V  V YNH+SG     SSLF L  + Y    SN
Sbjct: 159 LTGSLSFVRNLRKLRVLDVSYNHFSGILNPNSSLFELHHLTYLSLGSN 206


>At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5'
           fragment contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611 (19 copies); contains
           similarity to GB:AAD13301 from [Lycopersicon esculentum]
          Length = 681

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
 Frame = -1

Query: 483 FHYHTFLQIIKELLSNNQI-----YLRNVSK*YVFHVQYNHYSGY----SSLFVLP*VHY 331
           F +     +   +LSNN +     + RN+ K  V  V YNH+SG     SSLF L  + Y
Sbjct: 172 FSFSNLSMLSALVLSNNDLTGSLSFARNLRKLRVLDVSYNHFSGILNPNSSLFELHHIIY 231


>At1g30360.1 68414.m03712 early-responsive to dehydration stress
           protein (ERD4) nearly identical to ERD4 protein
           (early-responsive to dehydration stress) [Arabidopsis
           thaliana] GI:15375406; contains Pfam profile PF02714:
           Domain of unknown function DUF221
          Length = 724

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 656 DPSTFFWQCVNRKVFFNCLRTRFVYF 579
           +P    WQ +N K+F   +R  F+YF
Sbjct: 343 EPRQLLWQNLNIKLFSRIIRQYFIYF 368


>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291 A short intron was annotated between exons
           4 and 5 to circumvent a frameshift.   The frameshift may
           be artificial due to a sequencing error, or
           alternatively is genuine suggesting a truncated protein
           or pseudogene.
          Length = 495

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 369 RNSDYIEHERRITWTHFSNRFDCCSTILLLSAGKYDSETKRVSFH 503
           + S Y+  E+R+TW H S   D  +  + L  G YD+    + FH
Sbjct: 38  QRSGYLPREQRMTWRHNSALNDGKNLNVDLVGGYYDA-GDNIKFH 81


>At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,
           putative contains similarity to SWISS-PROT:Q9UFF9
           CCR4-NOT transcription complex, subunit 8 (CAF1-like
           protein, CALIFp) [Human]
          Length = 302

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 387 EHERRITWTHFSNRFDCCSTILLLSAGKYDSETKRVSFH 503
           E + +ITW +F   +D    +  L+ GK   ETK   FH
Sbjct: 130 EKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKE-EFH 167


>At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
           transcription complex, subunit 8 (CAF1-like protein,
           CALIFp) [Homo sapiens]
          Length = 310

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 387 EHERRITWTHFSNRFDCCSTILLLSAGKYDSETKRVSFH 503
           E + +ITW +F   +D    +  L+ GK   ETK   FH
Sbjct: 135 EKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKE-EFH 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,886,816
Number of Sequences: 28952
Number of extensions: 288838
Number of successful extensions: 636
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)