Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1586X
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 2.3
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 26 2.3
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 26 3.0
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 3.0
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 26 3.0
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 4.0
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 4.0
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 4.0
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 5.2
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 6.9
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 24 9.1
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 222 QPLVPSHR*QVTPQNPGIN*SPRSLALKSTGSMAVDMPRWLAEV 91
Q PS R +V PQ PG++ +P SL + ++ +EV
Sbjct: 109 QMSTPSRRREVDPQRPGVS-TPSSLLFSGSDALTFSQAHPSSEV 151
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 258 SWPGSELSPMSITTYGYPF 314
SW G ELSP T Y YP+
Sbjct: 208 SWAG-ELSPEDFTEYAYPY 225
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 3.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 114 MPRWLAEVI*RLNLIKCFSSSARTLRTA*YTFSRRRSS 1
MP W E + ++ F S RTL TA +TF + +S
Sbjct: 279 MPNW--EKLPGCEGVRSFPSHPRTLETAFFTFGKEMTS 314
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 159 EINLSLGSVELPVNDDLVPAVVGNHLVNGDPRGSWPGSELSPMSITTY 302
EI + S+ + D+ + ++ +L+N +P S E+ P + TT+
Sbjct: 172 EIFGAFSSIPIVSIDEYITWMITENLINSEPSNSSFSYEVQPSNYTTF 219
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 167 IDLLAVWPSRVQVRWPWICHDG 102
+DLL PS Q W WI H G
Sbjct: 283 LDLLLHPPSSAQKNWSWIKHVG 304
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.4 bits (53), Expect = 4.0
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -1
Query: 391 THNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVMDIGDSSEPG--QDPRGSPLTRWLP 224
+H + + H V D + ++ Y ++ + DSS PG Q+ WLP
Sbjct: 780 SHTSGLNKVSHHKEVLNDPNSYLTVRKSGTYTLLSVSDSSCPGTIQNVEQKYQVEWLP 837
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 4.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 310 GYPYVVMDIGDSSEPGQDPRGSP 242
G+P ++ + D SEPG+ SP
Sbjct: 126 GFPGFLLSLNDISEPGETGEASP 148
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 287 VHHYIRVSV--LNADHHVVVLKN 349
VHH +R+S+ LN D HV L+N
Sbjct: 292 VHHKLRLSISLLNPDGHVSELRN 314
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.0 bits (52), Expect = 5.2
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = -3
Query: 275 LRTWPGSARVSIDKMVADNRWYQVIVDR*LHRTQG*IDLLAVWPSRVQVRWPWICHDGWP 96
+R W S S D+ V++ + V+ ++ + T G IDL V+ + + W+ W
Sbjct: 218 IRLWNISLWGSEDEKVSEEFFESVLSNKPVRFTLGKIDLKIVFDALLMGHEDWVMSVDWH 277
Query: 95 RLFDASI*SSA 63
+ + SSA
Sbjct: 278 PTKEMILSSSA 288
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.6 bits (51), Expect = 6.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 38 RSVRAEEEKHLIRLRRQITSASHRGISTAIEPVLLRARLRGDQFIPGFC 184
RS A E L+R++ S + G + +E +LL+ + GD+ +C
Sbjct: 1033 RSAVAHAELIYWGLKRELCS-TETGSAVTLESILLQCVMFGDKIYGAYC 1080
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 24.2 bits (50), Expect = 9.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 2 EDRRLEKVYQAVRSVRAEEEKHLIRLRRQITSA 100
E RLEK Q E E LIR++R++ SA
Sbjct: 49 EQSRLEKNAQIPEYRVRESEAFLIRMQRRLESA 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,919
Number of Sequences: 5004
Number of extensions: 42814
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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