Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1586X
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 29 2.2
01_06_0183 - 27268190-27268281,27268454-27268478,27268568-272686... 29 2.2
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 28 3.9
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 28 3.9
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 28 3.9
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 28 3.9
06_03_1051 + 27215113-27215658 27 5.1
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 27 5.1
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 27 6.8
03_01_0564 - 4176177-4178096 27 6.8
11_04_0212 - 14919074-14919433,14919444-14920514 27 9.0
07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107 27 9.0
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 131 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 36
VR+ W+C+D RL D S+ S S ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447
>01_06_0183 -
27268190-27268281,27268454-27268478,27268568-27268621,
27268688-27268747,27269166-27269300,27270106-27270213,
27270330-27270458,27270845-27270905,27271081-27271112,
27271161-27271289
Length = 274
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 307 YPYVVMDIGDSSEPGQDPRGSPLTRWLPT-TAGTKSSLTGNSTEPRDKLI 161
Y Y++ D+GD +P + PL W+PT G + G+ P +LI
Sbjct: 28 YTYLLADVGDPEKPAVLGKWKPLL-WIPTQDIGNVAISDGDYNYPVQELI 76
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +1
Query: 184 WSYLSTMTWYQRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSP--CSRPKKR*C 357
W + S + L + ++ + CP+ PS G S C SP ++ +K+
Sbjct: 435 WRHASKQKSSKELPSYLIECSNCGHCSDLSGCPQAPSHIEGDSSNCSSPEAVNKVRKQIV 494
Query: 358 EILEIVLKCCECVTC 402
+ +++ L C+ C
Sbjct: 495 DHIDLWLSECQEQGC 509
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 158 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 24
LAV PS PW CH R+ +A +S P R E +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 190 YLSTMTWYQRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSPCSRP 342
+LST T Q A + S +++ P S PRC S + S+ RSP S P
Sbjct: 282 FLSTATSTQ--GANLSSAQSVWSPDLYGSSPRCASPEKIMGSQERSPRSSP 330
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 205 SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN-QVLLFFRTYA 41
SS G+ + +D I SG G A G GY+ PQSN +L+ +++A
Sbjct: 117 SSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQPQSNFHILVVLQSFA 171
>06_03_1051 + 27215113-27215658
Length = 181
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 221 CRQPSCQWRPSRILARFGAVPDVHHYIRVSVLNA 322
C P+C+ RPS GAV H+ R+ VL A
Sbjct: 147 CSCPTCRRRPSPEADGHGAVVGEDHHHRLQVLTA 180
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 107 DGWPRL-FDASI*SSASLLPHVRSERLDIP 21
DG R+ FDAS S +L+P +RS R ++P
Sbjct: 131 DGLRRINFDASTNSMVALVPRLRSSRPELP 160
>04_03_0517 + 16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 5 DRRLEKVYQAVRSVRAEEEKHLIRLRRQITSASHRGIST-AIE 130
++ EK YQ + +++ ++ ++ L ++++ +SH +T AIE
Sbjct: 1001 EQETEKAYQEIDNLKKNYDQEIVALNQRLSESSHHQETTLAIE 1043
>03_01_0564 - 4176177-4178096
Length = 639
Score = 27.1 bits (57), Expect = 6.8
Identities = 7/29 (24%), Positives = 20/29 (68%)
Frame = +1
Query: 157 RRSIYPWVLWSYLSTMTWYQRLSATILSM 243
RR ++PWVL ++ ++ W+ ++ ++++
Sbjct: 467 RRFLFPWVLGGFVMSIIWFYIIANELVAL 495
>11_04_0212 - 14919074-14919433,14919444-14920514
Length = 476
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 50 AEEEKHLIRLRRQITSASHRGISTAIEPVLLRARL-----RGDQFI 172
A ++H++R R +H G+S+ +E ++ RL +GDQ++
Sbjct: 355 AHRQQHILRHRSVGCFVNHSGLSSVVEGLVAGCRLVLLPMKGDQYL 400
>07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107
Length = 346
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 250 GSPLTRWLPTTAGTKSSLTGNSTEPRD 170
GSPL R+ PTTA + L + +P D
Sbjct: 70 GSPLARFAPTTAFRPADLDHDGWKPMD 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,445,574
Number of Sequences: 37544
Number of extensions: 314212
Number of successful extensions: 994
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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