Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1586X
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 33 0.14
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 0.57
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 30 0.99
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 29 1.3
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 29 1.3
SB_7550| Best HMM Match : INSIG (HMM E-Value=3.7) 29 1.7
SB_14604| Best HMM Match : PT (HMM E-Value=5.1) 29 2.3
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 4.0
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 28 4.0
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016) 27 5.3
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 27 5.3
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 27 5.3
SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2) 27 5.3
SB_59233| Best HMM Match : Involucrin (HMM E-Value=2.5) 27 7.0
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 27 7.0
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8) 27 7.0
SB_19017| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4) 27 9.2
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 169 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLLFFRTYAPNGLI 26
+++ ++ P+ Y FDG YA + + N V+L FRT PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 130 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKAS 8
F G GY G +N++ L+FRT P+GLI L S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 0.57
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 262 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 393
GQ +SC RC + G++ EC P RP +R E L + +C
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.9 bits (64), Expect = 0.99
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 22 GISSRSERTCGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARR 162
G + E CG+R D +NN+ Q S IHG+ TL+G R
Sbjct: 684 GTNKLYECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = -3
Query: 431 TRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 267
T TS +H T T TH +H TIS HY +H E I S H + T
Sbjct: 155 TNTSLQHHEHITTTSRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 211
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Frame = -3
Query: 431 TRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 267
T TS +H T TH +H TIS HY +H E I S H + T
Sbjct: 188 TNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 244
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -1
Query: 313 NGYPYVVMDIGDSSEPGQDPRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEY 134
+GY Y M S P DPR S R L G + +E D+ SS P +
Sbjct: 1722 SGYTYGTMPARPSKNPRGDPRNSSFRRAL--VGGGQGKPFSRDSEESDRSSSSNENP-DV 1778
Query: 133 RFDG 122
R+ G
Sbjct: 1779 RYPG 1782
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = -3
Query: 431 TRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 267
T TS +H T T TH +H TIS HY +H E I S H + T
Sbjct: 88 TNTSLQHHEHITTTSRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 144
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Frame = -3
Query: 431 TRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 267
T TS +H T TH +H TIS HY +H E I S H + T
Sbjct: 121 TNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 177
>SB_7550| Best HMM Match : INSIG (HMM E-Value=3.7)
Length = 377
Score = 29.1 bits (62), Expect = 1.7
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = -3
Query: 332 HGDRHSERIPVCSDGHRGQLRTWPGSARVSIDKMVADNRWYQVIVDR*LHRTQG*IDLLA 153
+ H++R +DG RGQ+R W + V D+ W+ V+ HR + LL
Sbjct: 261 NASHHTKRRARVADG-RGQIRPWSTVPIQVVRAHVDDHDWFDVLRAGTSHRPVC-LALLH 318
Query: 152 VWPSRVQVRWPWICH 108
W RV P H
Sbjct: 319 SWVHRVDPPSPVCLH 333
>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
Length = 344
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 262 QDPRG-SPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQ 140
Q P G S R+ TT GTK +G S PRD+ + + PQ
Sbjct: 215 QKPSGPSQNPRYQATTLGTKPQPSGPSHNPRDQATTLGTKPQ 256
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 434 NTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDR 321
+T S TL VTHS ++++ ++SH RF G H R
Sbjct: 240 HTLVSVSLTLLGVTHSIRYHSLFSVSHTRF-GVTHSSR 276
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 416 KHTLTHVTHSQHFNTISNISHYRFLGRLHGDR-HS 315
K TL VTHS + ++ ++SH RF G H R HS
Sbjct: 170 KLTLLGVTHSFRYYSLFSVSHTRF-GITHPSRCHS 203
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 283 GDSSEPGQDPRGSPLTRWLPTTAGTKSS 200
GD P PRG+PL LP T SS
Sbjct: 1587 GDEPPPTSTPRGTPLGTPLPRTTSRSSS 1614
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 27.9 bits (59), Expect = 4.0
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Frame = -1
Query: 391 THNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVMDIGDSSEPGQDPRGSPLTRWLPTTAG 212
TH TST+ F + D Y + P + + D P SP+ T A
Sbjct: 333 THETSTKKSGFGASFSGDRYQPTISPDAPPKITLPAEDMLSSISGPAISPIQSKYSTPAQ 392
Query: 211 TKSSLTGNSTEPR-----DKLISSQSGPQEYR 131
+L+ +EPR + S SGP Y+
Sbjct: 393 ADEALSTMPSEPRASPRMQRKYSPTSGPSSYK 424
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -3
Query: 437 RNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSE 312
R T ++T+ TH +H NTI +H+ + H E
Sbjct: 413 RTTHLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHE 454
>SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)
Length = 832
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 175 WVLWSYLSTMTWYQ 216
WV+ SYL+ TWYQ
Sbjct: 65 WVITSYLTNCTWYQ 78
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 211 TKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAP 38
TK TGN EP + Q G G+A G+GY T ++ Q + YAP
Sbjct: 3494 TKEGRTGNEYEPSEG--PGQGTGHVSGASGAGHAGTGGQGYGTSRTGQ--FYGSVYAP 3547
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 280 DSSEPGQDPRGSPLTRWLPTTAGTK-SSLTGNSTEPR 173
+S P DP +PLT + PTT G K SS TG+ R
Sbjct: 448 ESPTPTTDP-DAPLTTFPPTTQGRKSSSRTGSQAGKR 483
>SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 2 EDRRLEKVYQAVRSVRAEEEKHLIRL--RRQITSA-SHRGISTAIE 130
EDRR+ K + R +A E++H+ + R +T A R IS A+E
Sbjct: 79 EDRRITKELEGRRVTKALEDRHVTKALEDRHVTKALEDRRISKALE 124
>SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)
Length = 919
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 211 TKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAP 38
TK TGN EP + Q G G+A G+GY T ++ Q + YAP
Sbjct: 38 TKEGRTGNEYEPSEG--PGQGTGHVSGASGAGHAGTGGQGYGTSRTGQ--FYGSVYAP 91
>SB_59233| Best HMM Match : Involucrin (HMM E-Value=2.5)
Length = 138
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 11 RLEKVYQAVRSVRAEEEKHLIRLRRQITSASHRGISTAIEPVLLRARLRGDQ 166
RLEK+ QA + E+E+HL RL Q + + E LR L Q
Sbjct: 6 RLEKIRQANENSFQEQERHLERLISQQEAVYRQQSEQQKEQQRLREELAAQQ 57
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -3
Query: 356 HYRFLGRLHGDRHSERIPVCSDGHRGQLRTWPGSARVSIDKMVADNRWYQVIVDR 192
H + LH H+E DG+ QLR W +D A + Y++++ +
Sbjct: 383 HNEDIQALH-KMHAEERKTLIDGYENQLREWKSKHDHLMDTYTASVKDYEIMITK 436
>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
Length = 604
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -3
Query: 413 HTLTHVTHSQHFNTISNISH----YRFLGRLHGDRH 318
+TL+ V HS + NT+S I H Y G+ H D +
Sbjct: 468 NTLSGVEHSDNGNTLSGIDHSDNDYTLSGKDHSDNN 503
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 413 HTLTHVTHSQHFNTISNISH----YRFLGRLHGD 324
+TL+ + HS + NT+S I H Y GR H D
Sbjct: 432 NTLSEIDHSDNGNTLSGIDHSDNDYTLSGRDHLD 465
>SB_19017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 353 YRFLGRLHGDRHSERIPVCSDGHRGQLR 270
Y RLH DR+ ++ + DG G+LR
Sbjct: 118 YNIASRLHCDRNHQKRTILDDGVLGKLR 145
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -1
Query: 382 TSTQFLIFHTTVF*DDYMVIGIQNGYPYVVMDIGDSSEPGQD 257
T Q LIFH +F D + IQ P VVM++ D + G+D
Sbjct: 1248 TWDQTLIFHVDLF--DSLE-NIQRNPPTVVMELFDKDQVGKD 1286
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 286 IGDSSEPGQDPRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQ 140
+G +P PR +P + TT GTK +G S PRD+ + + PQ
Sbjct: 591 LGTKPQPS-GPRHNPGDQ--ATTLGTKPQPSGPSHNPRDQATTLGTKPQ 636
>SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4)
Length = 196
Score = 26.6 bits (56), Expect = 9.2
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Frame = -1
Query: 250 GSPLTRW-----LPTTAGTKS-SLTGNSTEPRDKLISSQSG--PQEYRFDG----RGYAT 107
GSP+TRW LP T + TG+ E + SQ G PQ YR G +GY +
Sbjct: 99 GSPVTRWKVTTGLPVTRWKVTYRATGHKVESYLQGYRSQGGRLPQGYRSQGGRLPQGYRS 158
Query: 106 MAGR 95
G+
Sbjct: 159 QGGK 162
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 283 GDSSEPGQDPRGSPLTRWLPTTAGT-KSSLTG 191
G S+ G+ P G P+TRW T T S+TG
Sbjct: 155 GYRSQGGKLPTGLPVTRWKVTYRATGHKSITG 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,036
Number of Sequences: 59808
Number of extensions: 356400
Number of successful extensions: 1126
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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