Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1586X
(445 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21318-3|AAC46667.1| 175|Caenorhabditis elegans Hypothetical pr... 32 0.16
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 31 0.38
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 31 0.38
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 31 0.38
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.38
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.38
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical pr... 29 2.0
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 28 2.7
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 27 4.6
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical p... 27 8.1
>U21318-3|AAC46667.1| 175|Caenorhabditis elegans Hypothetical
protein K03H9.1 protein.
Length = 175
Score = 32.3 bits (70), Expect = 0.16
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = -3
Query: 362 ISHYRFLGRLHGDRHSERIPVCSDGHRGQLRTWPGSARVSIDKMVADNRWYQVI 201
+ ++ F + + + E+IP+ DG G L T+ +++ ++K+ D W + +
Sbjct: 42 VENFSFSYHDYNELNREKIPISVDGRSGLLETFKDKSKLPVEKVPEDVLWEKAL 95
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 31.1 bits (67), Expect = 0.38
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 250 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 71
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 70 QVLLFFRTYAPNGLIYLL 17
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 31.1 bits (67), Expect = 0.38
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 250 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 71
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 70 QVLLFFRTYAPNGLIYLL 17
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 31.1 bits (67), Expect = 0.38
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 250 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 71
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 679 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 734
Query: 70 QVLLFFRTYAPNGLIYLL 17
++ L F T++P+GL++ +
Sbjct: 735 KISLSFLTFSPHGLLFFV 752
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 31.1 bits (67), Expect = 0.38
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 250 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 71
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 70 QVLLFFRTYAPNGLIYLL 17
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 31.1 bits (67), Expect = 0.38
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -1
Query: 250 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 71
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 70 QVLLFFRTYAPNGLIYLL 17
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 214 QRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSPCS 336
+ L+A++ + E LA + RCP + G RS CR CS
Sbjct: 657 RHLAASLQNQEMLAIL-KAAGATRCPKGYKGCRSNCRHDCS 696
>Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical
protein T02E1.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 2.0
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -3
Query: 410 TLTH-VTHS-QHFNTISNISHYRFLGRLHGDRHSERIPVCS---DGHRGQLRTWPGSARV 246
TL H T+S QHF+ ++ Y+F G L D +E +P+ D G LR + +
Sbjct: 342 TLAHFATYSFQHFDEFVHVVPYKFSGTLDRDLRNEIMPIFDLRIDPSEGPLRMGSNLSLL 401
Query: 245 SIDKMVADN 219
S+ +N
Sbjct: 402 SLASQNNEN 410
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 298 HTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYD 423
H+G + C+ P +R CE +E + V+C+SV Y+
Sbjct: 1653 HSGFEGDGIKKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYN 1694
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 27.5 bits (58), Expect = 4.6
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +1
Query: 103 PSWHIHGHRTCTLEGQTARRSIYPWVLWSYLSTMTWYQRLSATILSMETLADPGQVRSCP 282
P H H T T EG+T+ ++I + W +A + +T V + P
Sbjct: 401 PKGHFLVHATGTQEGETSVKTIAEKIFEKNEVEPYWKMSFTANSMKFDTAGAENVVVAPP 460
Query: 283 RCPSLH-TGIRSECR 324
+LH + ECR
Sbjct: 461 VDANLHYASVVEECR 475
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 76 IEASNNLGQPSWHIHGHRTCTLEGQTAR 159
+E +NN+ P+WHI TC L Q AR
Sbjct: 777 LEYANNMKDPNWHI----TCFLITQMAR 800
>Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical
protein M01F1.9 protein.
Length = 366
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = -1
Query: 247 SPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGP---QEYRFD---GRGYATMAGRGYL 86
+P +R PTT+ TKS+ T S+ P Q GP +++ D R RG+L
Sbjct: 62 TPSSRPRPTTSVTKSAATVYSSHPNILFCELQLGPGQTKQFVCDIPLSRNGIPPTFRGHL 121
Query: 85 TPQSNQV 65
SN++
Sbjct: 122 VKYSNRI 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,932
Number of Sequences: 27780
Number of extensions: 259480
Number of successful extensions: 785
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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