BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1586X (445 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 32 0.15 At4g36195.1 68417.m05150 serine carboxypeptidase S28 family prot... 29 1.4 At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 29 1.9 At5g05160.1 68418.m00549 leucine-rich repeat transmembrane prote... 27 5.7 At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containi... 27 5.7 At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) simil... 27 5.7 At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 27 5.7 At2g18080.1 68415.m02102 serine carboxypeptidase S28 family prot... 27 7.5 At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ... 26 10.0 At3g02890.1 68416.m00284 PHD finger protein-related contains low... 26 10.0 At1g31175.1 68414.m03816 expressed protein 26 10.0 >At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical to gi_11935088_gb_AAG41964 Length = 209 Score = 32.3 bits (70), Expect = 0.15 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -1 Query: 298 VVMDIGDSSEPGQDPRGSPLTRWLPTTAGTKS-SLTGNSTEPRDKLISSQSGPQE 137 VV +G S P P SP T PTT+ TKS ++T +T P +S S P E Sbjct: 15 VVAGVGGQS-PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVE 68 >At4g36195.1 68417.m05150 serine carboxypeptidase S28 family protein contains Pfam PF05577: Serine carboxypeptidase S28 Length = 488 Score = 29.1 bits (62), Expect = 1.4 Identities = 15/56 (26%), Positives = 23/56 (41%) Frame = +1 Query: 184 WSYLSTMTWYQRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR 351 W + S T L + I++ +R CP+ P + G C SP + K R Sbjct: 411 WRHASKQTSSPELPSYIVTCHNCGHGSDLRGCPQSPMVIGGDSKNCSSPDAVNKVR 466 >At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein contains Pfam PF05577: Serine carboxypeptidase S28 Length = 493 Score = 28.7 bits (61), Expect = 1.9 Identities = 19/70 (27%), Positives = 27/70 (38%) Frame = +1 Query: 184 WSYLSTMTWYQRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEI 363 W + S T L + I++ +R CP+ + G C SP + K R I Sbjct: 422 WRHASKQTSSPDLPSYIMTCHNCGHGSDLRGCPQSAMVIEGDAQNCSSPDAVNKVRQHMI 481 Query: 364 LEIVLKCCEC 393 I L EC Sbjct: 482 KHIDLWLSEC 491 >At5g05160.1 68418.m00549 leucine-rich repeat transmembrane protein kinase, putative Length = 640 Score = 27.1 bits (57), Expect = 5.7 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +3 Query: 147 PDCEEINLSLGSVELPVNDDLVPA----VVGNHLVNGDPRGSWPGSELSPMS 290 P + +NLS ++ P+ + L + +GN L+ G P + G +SP S Sbjct: 194 PSVKVVNLSYNNLSGPIPEHLKKSPEYSFIGNSLLCGPPLNACSGGAISPSS 245 >At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 653 Score = 27.1 bits (57), Expect = 5.7 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -1 Query: 295 VMDIGDSSEPGQDPRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLI 161 V+D+ D+ Q+ + +P W+ G + TGN T P K I Sbjct: 589 VLDVRDAMRQ-QNVKKTPGCSWIVLKNGVHTFFTGNQTHPEFKSI 632 >At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) similar to sodium/calcium exchanger protein [Mus musculus] gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563 Length = 643 Score = 27.1 bits (57), Expect = 5.7 Identities = 7/29 (24%), Positives = 19/29 (65%) Frame = +1 Query: 157 RRSIYPWVLWSYLSTMTWYQRLSATILSM 243 RR + PWVL ++ ++ W+ ++ ++++ Sbjct: 473 RRFLIPWVLGGFIMSIVWFYMIANELVAL 501 >At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to WDR protein, form B (GI:14970593) [Mus musculus] Length = 1589 Score = 27.1 bits (57), Expect = 5.7 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -1 Query: 268 PGQDPRGSPLTRWLPTTAG 212 P Q PRG P R+LPT G Sbjct: 581 PPQPPRGGPRQRFLPTPRG 599 >At2g18080.1 68415.m02102 serine carboxypeptidase S28 family protein similar to SP|Q9NQE7 Thymus-specific serine protease precursor (EC 3.4.-.-) {Homo sapiens}; contains Pfam profile PF05577: Serine carboxypeptidase S28 Length = 365 Score = 26.6 bits (56), Expect = 7.5 Identities = 16/70 (22%), Positives = 25/70 (35%) Frame = +1 Query: 184 WSYLSTMTWYQRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEI 363 W + S + + I+ +R CP+ P + G + C P K R + Sbjct: 288 WRHASKQNSTHEMPSYIIKCRNCGHGSDIRGCPQSPMVIEGKSNNCSLPDYVNKVRQQMV 347 Query: 364 LEIVLKCCEC 393 I L EC Sbjct: 348 EHIDLWLSEC 357 >At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing protein low similarity to cysteine-rich polycomb-like protein (cpp1) [Glycine max] GI:4218187; contains Pfam profile PF03638: Tesmin/TSO1-like CXC domain Length = 360 Score = 26.2 bits (55), Expect = 10.0 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Frame = +1 Query: 262 GQVRSCPRCPSLHTGIRSE-CRSPCSRPKKR*CEILEIVLKC---CECVTCVSV 411 G + P G+ S C+ +R K+ CE + L C C+C+ C +V Sbjct: 129 GSLTDNQAAPDTKPGLLSRGCKCKRTRCLKKYCECFQANLLCSDNCKCINCKNV 182 >At3g02890.1 68416.m00284 PHD finger protein-related contains low similarity to PHD-finger domain proteins Length = 963 Score = 26.2 bits (55), Expect = 10.0 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = -3 Query: 368 SNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRTWPGSARVSIDKMVADN 219 S+ISH L R H D+ S ++ C+D H Q R+ G +V +K A N Sbjct: 102 SDISHGPLLDRPHKDQDSMKVDSCND-H--QARSTLGQGKVK-EKSGAKN 147 >At1g31175.1 68414.m03816 expressed protein Length = 118 Score = 26.2 bits (55), Expect = 10.0 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +1 Query: 286 CPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCC 387 CP +RS C S + K++ CE ++ L C Sbjct: 74 CPEESEAVRSLCSSGGTSLKRKQCEYAQLSLSLC 107 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,559,767 Number of Sequences: 28952 Number of extensions: 239615 Number of successful extensions: 761 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 736 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 761 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 712739520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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