Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1586X
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    32   0.15 
At4g36195.1 68417.m05150 serine carboxypeptidase S28 family prot...    29   1.4  
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot...    29   1.9  
At5g05160.1 68418.m00549 leucine-rich repeat transmembrane prote...    27   5.7  
At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containi...    27   5.7  
At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) simil...    27   5.7  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    27   5.7  
At2g18080.1 68415.m02102 serine carboxypeptidase S28 family prot...    27   7.5  
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    26   10.0 
At3g02890.1 68416.m00284 PHD finger protein-related contains low...    26   10.0 
At1g31175.1 68414.m03816 expressed protein                             26   10.0 

>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 298 VVMDIGDSSEPGQDPRGSPLTRWLPTTAGTKS-SLTGNSTEPRDKLISSQSGPQE 137
           VV  +G  S P   P  SP T   PTT+ TKS ++T  +T P     +S S P E
Sbjct: 15  VVAGVGGQS-PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVE 68


>At4g36195.1 68417.m05150 serine carboxypeptidase S28 family protein
           contains Pfam PF05577: Serine carboxypeptidase S28
          Length = 488

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +1

Query: 184 WSYLSTMTWYQRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR 351
           W + S  T    L + I++         +R CP+ P +  G    C SP +  K R
Sbjct: 411 WRHASKQTSSPELPSYIVTCHNCGHGSDLRGCPQSPMVIGGDSKNCSSPDAVNKVR 466


>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
           contains Pfam PF05577: Serine carboxypeptidase S28
          Length = 493

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +1

Query: 184 WSYLSTMTWYQRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEI 363
           W + S  T    L + I++         +R CP+   +  G    C SP +  K R   I
Sbjct: 422 WRHASKQTSSPDLPSYIMTCHNCGHGSDLRGCPQSAMVIEGDAQNCSSPDAVNKVRQHMI 481

Query: 364 LEIVLKCCEC 393
             I L   EC
Sbjct: 482 KHIDLWLSEC 491


>At5g05160.1 68418.m00549 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 640

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 147 PDCEEINLSLGSVELPVNDDLVPA----VVGNHLVNGDPRGSWPGSELSPMS 290
           P  + +NLS  ++  P+ + L  +     +GN L+ G P  +  G  +SP S
Sbjct: 194 PSVKVVNLSYNNLSGPIPEHLKKSPEYSFIGNSLLCGPPLNACSGGAISPSS 245


>At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 653

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 295 VMDIGDSSEPGQDPRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLI 161
           V+D+ D+    Q+ + +P   W+    G  +  TGN T P  K I
Sbjct: 589 VLDVRDAMRQ-QNVKKTPGCSWIVLKNGVHTFFTGNQTHPEFKSI 632


>At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 643

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +1

Query: 157 RRSIYPWVLWSYLSTMTWYQRLSATILSM 243
           RR + PWVL  ++ ++ W+  ++  ++++
Sbjct: 473 RRFLIPWVLGGFIMSIVWFYMIANELVAL 501


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to WDR protein, form B (GI:14970593) [Mus
           musculus]
          Length = 1589

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 268 PGQDPRGSPLTRWLPTTAG 212
           P Q PRG P  R+LPT  G
Sbjct: 581 PPQPPRGGPRQRFLPTPRG 599


>At2g18080.1 68415.m02102 serine carboxypeptidase S28 family protein
           similar to SP|Q9NQE7 Thymus-specific serine protease
           precursor (EC 3.4.-.-) {Homo sapiens}; contains Pfam
           profile PF05577: Serine carboxypeptidase S28
          Length = 365

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/70 (22%), Positives = 25/70 (35%)
 Frame = +1

Query: 184 WSYLSTMTWYQRLSATILSMETLADPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEI 363
           W + S       + + I+          +R CP+ P +  G  + C  P    K R   +
Sbjct: 288 WRHASKQNSTHEMPSYIIKCRNCGHGSDIRGCPQSPMVIEGKSNNCSLPDYVNKVRQQMV 347

Query: 364 LEIVLKCCEC 393
             I L   EC
Sbjct: 348 EHIDLWLSEC 357


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +1

Query: 262 GQVRSCPRCPSLHTGIRSE-CRSPCSRPKKR*CEILEIVLKC---CECVTCVSV 411
           G +      P    G+ S  C+   +R  K+ CE  +  L C   C+C+ C +V
Sbjct: 129 GSLTDNQAAPDTKPGLLSRGCKCKRTRCLKKYCECFQANLLCSDNCKCINCKNV 182


>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 368 SNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRTWPGSARVSIDKMVADN 219
           S+ISH   L R H D+ S ++  C+D H  Q R+  G  +V  +K  A N
Sbjct: 102 SDISHGPLLDRPHKDQDSMKVDSCND-H--QARSTLGQGKVK-EKSGAKN 147


>At1g31175.1 68414.m03816 expressed protein
          Length = 118

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 286 CPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCC 387
           CP     +RS C S  +  K++ CE  ++ L  C
Sbjct: 74  CPEESEAVRSLCSSGGTSLKRKQCEYAQLSLSLC 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,559,767
Number of Sequences: 28952
Number of extensions: 239615
Number of successful extensions: 761
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)