Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1584
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 33 0.065
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.20
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 31 0.26
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.35
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 30 0.46
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 29 0.60
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 29 0.80
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc... 29 1.1
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 28 1.4
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 27 3.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.3
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.6
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 5.6
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 7.4
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.8
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.8
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 25 9.8
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 32.7 bits (71), Expect = 0.065
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 44 PEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLF 208
P+K+I S + S+ N S+NV NV + K + + + N+ +S SI++ +F
Sbjct: 14 PKKVILSLSLKESSKINDSQNVSNVSSKEKCETEALLREENKENLSSDSIRQMIF 68
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 31.1 bits (67), Expect = 0.20
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 23 EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTP-KSSDDQIKIQSNE 169
+D + PEK + S+P K NV+NV N P K D IK ++E
Sbjct: 299 QDNGKEEPEKEVESTPSILQNFKVSLVNVENVPNEPFKRQDPVIKAVTSE 348
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 30.7 bits (66), Expect = 0.26
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 495 NFGSSVVSDEVKIKGFISMFLKEINETYQEVMTLCDT 605
N +S + + K +S L+ I ETY +V++ CDT
Sbjct: 80 NLQASFLGTTILGKTQVSFILRRIEETYNDVLSACDT 116
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.35
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 35 RVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQS 163
R S EK SS D R+ K+ N +TPK S +QIK +S
Sbjct: 833 RESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKS 875
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 29.9 bits (64), Expect = 0.46
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 98 SENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKE---DLFLGLELEKSSTDNKKSEQNK 265
+ N +N+E T + + IKIQ + G + KE GLE E S D K E ++
Sbjct: 33 TNNSKNIETTSSNGAEDIKIQRDVGDDKDLDDKEANDKSSKGLEEESDSKDRKTIETDQ 91
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.60
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 62 SSPDRRSTVKNQSENVQNVENT-PKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSST 238
S+ D + + +V+ EN+ PKS+++++ EG+TT S ++ E K
Sbjct: 125 STEDASKPTSSDTASVKETENSDPKSAENEVL----EGETTQHSNNKEAHPNTEENKEQE 180
Query: 239 DNKKSEQN 262
DN++ +++
Sbjct: 181 DNEEDDED 188
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 29.1 bits (62), Expect = 0.80
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 8 NDSFVEDISRVSPEKLIPSSPDRRSTVKNQSENV-QNVENTPKSSDDQIKIQSNEGKTTS 184
N + S SP+ + PS P + E V +NV ++P+SS+D I + + S
Sbjct: 102 NPQEYSEFSVASPQTISPSLP-----LNLDDETVSENVPHSPQSSNDAIPV-IKITEENS 155
Query: 185 VSIKEDLFLGLELEK 229
+K+ L++GL ++
Sbjct: 156 FRVKDTLYVGLHKDQ 170
>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
Arg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 20 VEDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIK 196
+ D+SR KLI S + + K +N ++V+ + SS + I S T VS++
Sbjct: 13 IRDLSRGEIVKLIDRSSEIKQAYKQNFQNRRSVQMSGLSSQNVAMIFSKRSTRTRVSVE 71
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 720 TVQRFTKGFYMVNSLFWLLHQ 658
T+Q +GFYMV +++W+ H+
Sbjct: 177 TIQTLWQGFYMVLAVYWVKHR 197
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/66 (21%), Positives = 30/66 (45%)
Frame = +2
Query: 68 PDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNK 247
P+ T + N+ ++ N ++ +I S +T + D + + +K +NK
Sbjct: 387 PEMFPTFRVYEYNISDIANQLDDREELTEITSFNWETLEEQSQSDYEIDKKKKKKKKNNK 446
Query: 248 KSEQNK 265
K ++NK
Sbjct: 447 KKKKNK 452
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 696 FYMVNSLFWLLHQLRF*YDLECCYLRGLYSLYHIMS 589
F + S F +LH L F + C +L L+SL H++S
Sbjct: 143 FIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLS 178
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +2
Query: 71 DRRSTVKNQSENVQN----VENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSST 238
+R + + +EN N E KS+ Q K QS+EG T+ E L LEK +
Sbjct: 256 ERATKLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELINSLEKKVS 315
Query: 239 D 241
D
Sbjct: 316 D 316
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 23 EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQ 148
+D+ V KL S+PD ++ + E + ++ P SS+D+
Sbjct: 255 DDLLSVDELKLKYSNPDLIKNIEREEEAEETSDDEPLSSEDE 296
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 7.4
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Frame = +2
Query: 23 EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQ--IKIQSN-----EGKTT 181
ED+ S ++ S + S QSE V+N+E+ +++ +Q+N +G T
Sbjct: 1324 EDVEMRSEDQSDTSESEVGSKDDVQSEEVENLESAGDEDEEEEPSALQANGFDWTDGSTV 1383
Query: 182 SVSIKEDLFLGLELEKSSTDNKKSEQNKY*KMKKNLTKM 298
+ +D + E KKS+ +++ +K+L ++
Sbjct: 1384 FDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEI 1422
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.8
Identities = 20/78 (25%), Positives = 31/78 (39%)
Frame = +2
Query: 29 ISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLF 208
+ +V PE P+SP STV + +PK ++ S TT ++K
Sbjct: 395 MQQVRPET--PNSPRLNSTVIQSKWDSLGHTASPKMQTQPVRSVSQSSATTETNVKPTKE 452
Query: 209 LGLELEKSSTDNKKSEQN 262
++ SS D K N
Sbjct: 453 ENADVPVSSPDYLKDLVN 470
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 9.8
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = +2
Query: 29 ISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLF 208
+S V P +S S+ + S + + +T SS S+ G TSV D+
Sbjct: 41 LSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSG--TSVITASDVS 98
Query: 209 LGLELEKSSTDNKKSEQ 259
E+ SST+N +Q
Sbjct: 99 ASNEIISSSTNNSIHQQ 115
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 531 IKGFISMFLKEINETYQEVMTLCDTSYKDLLDNNIPN 641
+K F+ + KE + +Y + + D Y DLL + PN
Sbjct: 98 LKVFVDVDGKEYSRSYTPLSSDADKGYFDLLVKSYPN 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,792
Number of Sequences: 5004
Number of extensions: 50958
Number of successful extensions: 191
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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