BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1584 (821 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 33 0.065 SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.20 SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 31 0.26 SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.35 SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 30 0.46 SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 29 0.60 SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 29 0.80 SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc... 29 1.1 SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 28 1.4 SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 27 3.2 SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.3 SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.6 SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 5.6 SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 7.4 SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.8 SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.8 SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 25 9.8 >SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 517 Score = 32.7 bits (71), Expect = 0.065 Identities = 17/55 (30%), Positives = 31/55 (56%) Frame = +2 Query: 44 PEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLF 208 P+K+I S + S+ N S+NV NV + K + + + N+ +S SI++ +F Sbjct: 14 PKKVILSLSLKESSKINDSQNVSNVSSKEKCETEALLREENKENLSSDSIRQMIF 68 >SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1067 Score = 31.1 bits (67), Expect = 0.20 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +2 Query: 23 EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTP-KSSDDQIKIQSNE 169 +D + PEK + S+P K NV+NV N P K D IK ++E Sbjct: 299 QDNGKEEPEKEVESTPSILQNFKVSLVNVENVPNEPFKRQDPVIKAVTSE 348 >SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 442 Score = 30.7 bits (66), Expect = 0.26 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 495 NFGSSVVSDEVKIKGFISMFLKEINETYQEVMTLCDT 605 N +S + + K +S L+ I ETY +V++ CDT Sbjct: 80 NLQASFLGTTILGKTQVSFILRRIEETYNDVLSACDT 116 >SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces pombe|chr 2|||Manual Length = 1014 Score = 30.3 bits (65), Expect = 0.35 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +2 Query: 35 RVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQS 163 R S EK SS D R+ K+ N +TPK S +QIK +S Sbjct: 833 RESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKS 875 >SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 568 Score = 29.9 bits (64), Expect = 0.46 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = +2 Query: 98 SENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKE---DLFLGLELEKSSTDNKKSEQNK 265 + N +N+E T + + IKIQ + G + KE GLE E S D K E ++ Sbjct: 33 TNNSKNIETTSSNGAEDIKIQRDVGDDKDLDDKEANDKSSKGLEEESDSKDRKTIETDQ 91 >SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 29.5 bits (63), Expect = 0.60 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +2 Query: 62 SSPDRRSTVKNQSENVQNVENT-PKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSST 238 S+ D + + +V+ EN+ PKS+++++ EG+TT S ++ E K Sbjct: 125 STEDASKPTSSDTASVKETENSDPKSAENEVL----EGETTQHSNNKEAHPNTEENKEQE 180 Query: 239 DNKKSEQN 262 DN++ +++ Sbjct: 181 DNEEDDED 188 >SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 736 Score = 29.1 bits (62), Expect = 0.80 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = +2 Query: 8 NDSFVEDISRVSPEKLIPSSPDRRSTVKNQSENV-QNVENTPKSSDDQIKIQSNEGKTTS 184 N + S SP+ + PS P + E V +NV ++P+SS+D I + + S Sbjct: 102 NPQEYSEFSVASPQTISPSLP-----LNLDDETVSENVPHSPQSSNDAIPV-IKITEENS 155 Query: 185 VSIKEDLFLGLELEK 229 +K+ L++GL ++ Sbjct: 156 FRVKDTLYVGLHKDQ 170 >SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosaccharomyces pombe|chr 1|||Manual Length = 327 Score = 28.7 bits (61), Expect = 1.1 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +2 Query: 20 VEDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIK 196 + D+SR KLI S + + K +N ++V+ + SS + I S T VS++ Sbjct: 13 IRDLSRGEIVKLIDRSSEIKQAYKQNFQNRRSVQMSGLSSQNVAMIFSKRSTRTRVSVE 71 >SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 28.3 bits (60), Expect = 1.4 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = -3 Query: 720 TVQRFTKGFYMVNSLFWLLHQ 658 T+Q +GFYMV +++W+ H+ Sbjct: 177 TIQTLWQGFYMVLAVYWVKHR 197 >SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 27.1 bits (57), Expect = 3.2 Identities = 14/66 (21%), Positives = 30/66 (45%) Frame = +2 Query: 68 PDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNK 247 P+ T + N+ ++ N ++ +I S +T + D + + +K +NK Sbjct: 387 PEMFPTFRVYEYNISDIANQLDDREELTEITSFNWETLEEQSQSDYEIDKKKKKKKKNNK 446 Query: 248 KSEQNK 265 K ++NK Sbjct: 447 KKKKNK 452 >SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 230 Score = 26.6 bits (56), Expect = 4.3 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -3 Query: 696 FYMVNSLFWLLHQLRF*YDLECCYLRGLYSLYHIMS 589 F + S F +LH L F + C +L L+SL H++S Sbjct: 143 FIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLS 178 >SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 26.2 bits (55), Expect = 5.6 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = +2 Query: 71 DRRSTVKNQSENVQN----VENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSST 238 +R + + +EN N E KS+ Q K QS+EG T+ E L LEK + Sbjct: 256 ERATKLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELINSLEKKVS 315 Query: 239 D 241 D Sbjct: 316 D 316 >SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1288 Score = 26.2 bits (55), Expect = 5.6 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = +2 Query: 23 EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQ 148 +D+ V KL S+PD ++ + E + ++ P SS+D+ Sbjct: 255 DDLLSVDELKLKYSNPDLIKNIEREEEAEETSDDEPLSSEDE 296 >SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces pombe|chr 3|||Manual Length = 1690 Score = 25.8 bits (54), Expect = 7.4 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 7/99 (7%) Frame = +2 Query: 23 EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQ--IKIQSN-----EGKTT 181 ED+ S ++ S + S QSE V+N+E+ +++ +Q+N +G T Sbjct: 1324 EDVEMRSEDQSDTSESEVGSKDDVQSEEVENLESAGDEDEEEEPSALQANGFDWTDGSTV 1383 Query: 182 SVSIKEDLFLGLELEKSSTDNKKSEQNKY*KMKKNLTKM 298 + +D + E KKS+ +++ +K+L ++ Sbjct: 1384 FDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEI 1422 >SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 630 Score = 25.4 bits (53), Expect = 9.8 Identities = 20/78 (25%), Positives = 31/78 (39%) Frame = +2 Query: 29 ISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLF 208 + +V PE P+SP STV + +PK ++ S TT ++K Sbjct: 395 MQQVRPET--PNSPRLNSTVIQSKWDSLGHTASPKMQTQPVRSVSQSSATTETNVKPTKE 452 Query: 209 LGLELEKSSTDNKKSEQN 262 ++ SS D K N Sbjct: 453 ENADVPVSSPDYLKDLVN 470 >SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 230 Score = 25.4 bits (53), Expect = 9.8 Identities = 21/77 (27%), Positives = 33/77 (42%) Frame = +2 Query: 29 ISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLF 208 +S V P +S S+ + S + + +T SS S+ G TSV D+ Sbjct: 41 LSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSG--TSVITASDVS 98 Query: 209 LGLELEKSSTDNKKSEQ 259 E+ SST+N +Q Sbjct: 99 ASNEIISSSTNNSIHQQ 115 >SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe|chr 3|||Manual Length = 301 Score = 25.4 bits (53), Expect = 9.8 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 Query: 531 IKGFISMFLKEINETYQEVMTLCDTSYKDLLDNNIPN 641 +K F+ + KE + +Y + + D Y DLL + PN Sbjct: 98 LKVFVDVDGKEYSRSYTPLSSDADKGYFDLLVKSYPN 134 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,811,792 Number of Sequences: 5004 Number of extensions: 50958 Number of successful extensions: 191 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 191 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 402440190 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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