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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1584
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    33   0.065
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    31   0.20 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    31   0.26 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    30   0.35 
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    30   0.46 
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    29   0.60 
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    29   0.80 
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    29   1.1  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    28   1.4  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    27   3.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.3  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.6  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   5.6  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   7.4  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   9.8  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.8  
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    25   9.8  

>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 32.7 bits (71), Expect = 0.065
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +2

Query: 44  PEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLF 208
           P+K+I S   + S+  N S+NV NV +  K   + +  + N+   +S SI++ +F
Sbjct: 14  PKKVILSLSLKESSKINDSQNVSNVSSKEKCETEALLREENKENLSSDSIRQMIF 68


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 23  EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTP-KSSDDQIKIQSNE 169
           +D  +  PEK + S+P      K    NV+NV N P K  D  IK  ++E
Sbjct: 299 QDNGKEEPEKEVESTPSILQNFKVSLVNVENVPNEPFKRQDPVIKAVTSE 348


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 495 NFGSSVVSDEVKIKGFISMFLKEINETYQEVMTLCDT 605
           N  +S +   +  K  +S  L+ I ETY +V++ CDT
Sbjct: 80  NLQASFLGTTILGKTQVSFILRRIEETYNDVLSACDT 116


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 35  RVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQS 163
           R S EK   SS D R+  K+      N  +TPK S +QIK +S
Sbjct: 833 RESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKS 875


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 98  SENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKE---DLFLGLELEKSSTDNKKSEQNK 265
           + N +N+E T  +  + IKIQ + G    +  KE       GLE E  S D K  E ++
Sbjct: 33  TNNSKNIETTSSNGAEDIKIQRDVGDDKDLDDKEANDKSSKGLEEESDSKDRKTIETDQ 91


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 62  SSPDRRSTVKNQSENVQNVENT-PKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSST 238
           S+ D      + + +V+  EN+ PKS+++++     EG+TT  S  ++     E  K   
Sbjct: 125 STEDASKPTSSDTASVKETENSDPKSAENEVL----EGETTQHSNNKEAHPNTEENKEQE 180

Query: 239 DNKKSEQN 262
           DN++ +++
Sbjct: 181 DNEEDDED 188


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 8   NDSFVEDISRVSPEKLIPSSPDRRSTVKNQSENV-QNVENTPKSSDDQIKIQSNEGKTTS 184
           N     + S  SP+ + PS P     +    E V +NV ++P+SS+D I +     +  S
Sbjct: 102 NPQEYSEFSVASPQTISPSLP-----LNLDDETVSENVPHSPQSSNDAIPV-IKITEENS 155

Query: 185 VSIKEDLFLGLELEK 229
             +K+ L++GL  ++
Sbjct: 156 FRVKDTLYVGLHKDQ 170


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +2

Query: 20  VEDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIK 196
           + D+SR    KLI  S + +   K   +N ++V+ +  SS +   I S     T VS++
Sbjct: 13  IRDLSRGEIVKLIDRSSEIKQAYKQNFQNRRSVQMSGLSSQNVAMIFSKRSTRTRVSVE 71


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 720 TVQRFTKGFYMVNSLFWLLHQ 658
           T+Q   +GFYMV +++W+ H+
Sbjct: 177 TIQTLWQGFYMVLAVYWVKHR 197


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/66 (21%), Positives = 30/66 (45%)
 Frame = +2

Query: 68  PDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNK 247
           P+   T +    N+ ++ N     ++  +I S   +T     + D  +  + +K   +NK
Sbjct: 387 PEMFPTFRVYEYNISDIANQLDDREELTEITSFNWETLEEQSQSDYEIDKKKKKKKKNNK 446

Query: 248 KSEQNK 265
           K ++NK
Sbjct: 447 KKKKNK 452


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 696 FYMVNSLFWLLHQLRF*YDLECCYLRGLYSLYHIMS 589
           F +  S F +LH L F +   C +L  L+SL H++S
Sbjct: 143 FIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLS 178


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +2

Query: 71  DRRSTVKNQSENVQN----VENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSST 238
           +R + +   +EN  N     E   KS+  Q K QS+EG  T+    E   L   LEK  +
Sbjct: 256 ERATKLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELINSLEKKVS 315

Query: 239 D 241
           D
Sbjct: 316 D 316


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 23  EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQ 148
           +D+  V   KL  S+PD    ++ + E  +  ++ P SS+D+
Sbjct: 255 DDLLSVDELKLKYSNPDLIKNIEREEEAEETSDDEPLSSEDE 296


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
 Frame = +2

Query: 23   EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQ--IKIQSN-----EGKTT 181
            ED+   S ++   S  +  S    QSE V+N+E+     +++    +Q+N     +G T 
Sbjct: 1324 EDVEMRSEDQSDTSESEVGSKDDVQSEEVENLESAGDEDEEEEPSALQANGFDWTDGSTV 1383

Query: 182  SVSIKEDLFLGLELEKSSTDNKKSEQNKY*KMKKNLTKM 298
               + +D     + E      KKS+ +++   +K+L ++
Sbjct: 1384 FDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEI 1422


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +2

Query: 29  ISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLF 208
           + +V PE   P+SP   STV     +      +PK     ++  S    TT  ++K    
Sbjct: 395 MQQVRPET--PNSPRLNSTVIQSKWDSLGHTASPKMQTQPVRSVSQSSATTETNVKPTKE 452

Query: 209 LGLELEKSSTDNKKSEQN 262
              ++  SS D  K   N
Sbjct: 453 ENADVPVSSPDYLKDLVN 470


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +2

Query: 29  ISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLF 208
           +S V P     +S    S+  + S +  +  +T  SS       S+ G  TSV    D+ 
Sbjct: 41  LSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSG--TSVITASDVS 98

Query: 209 LGLELEKSSTDNKKSEQ 259
              E+  SST+N   +Q
Sbjct: 99  ASNEIISSSTNNSIHQQ 115


>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 531 IKGFISMFLKEINETYQEVMTLCDTSYKDLLDNNIPN 641
           +K F+ +  KE + +Y  + +  D  Y DLL  + PN
Sbjct: 98  LKVFVDVDGKEYSRSYTPLSSDADKGYFDLLVKSYPN 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,792
Number of Sequences: 5004
Number of extensions: 50958
Number of successful extensions: 191
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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