Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1584
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213... 31 1.5
06_03_1004 - 26832638-26833183,26833373-26833569,26833636-268338... 30 1.9
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 30 1.9
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 29 4.5
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 29 4.5
03_01_0017 - 148934-148999,149000-149074,149343-149408,149737-14... 29 4.5
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 4.5
08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138 29 5.9
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 29 5.9
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 29 5.9
01_06_0121 + 26646288-26647025,26648466-26648494,26649387-266494... 28 7.8
>03_06_0559 +
34719296-34719410,34719519-34719577,34719664-34721322,
34722421-34722562,34722645-34723330
Length = 886
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 23 EDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIK 196
EDIS++S KL P+RR +N +N +S + +Q+N + V K
Sbjct: 309 EDISKIS-RKLATRDPERRMVERNGINQGKNNNQVGMASSSNVLVQNNRKQNAMVKHK 365
>06_03_1004 -
26832638-26833183,26833373-26833569,26833636-26833861,
26833943-26834072,26835884-26836188
Length = 467
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 8 NDSFVEDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQ--SNEGKTT 181
N+ F+E + SP+++ P S + + +N++ T D K + + +T+
Sbjct: 290 NNKFLELNNSTSPDRMEPPSTQGHTVAGHAESGNENIDTTRPEGRDSAKRRRLKSYAETS 349
Query: 182 SVSIKEDLFLGLELEKSSTDNKKSEQ 259
S S ++ L+ + T+ K+ +Q
Sbjct: 350 SSSTTVEVLQRLQEKSEKTELKQDQQ 375
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 164 NEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNKY*KMKKNLTKMMILQQSTPANQK**D 343
N G + +D F+ +E+EK DN+ S+ + K +K LTK +I P ++
Sbjct: 330 NGGNAPRIHSMDDYFM-IEVEKKVEDNEGSKSSSTSKGRKQLTKKVIEYCYEPEMEE--T 386
Query: 344 YSQNVLN 364
Y ++LN
Sbjct: 387 YRSSMLN 393
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 62 SSPDRRSTVKNQSENVQNVENTPKSSDDQI---KIQSNEGKTTSVSIK 196
S + S+V + SE + + ++TPKSS + +I S E + +V +K
Sbjct: 16 SPAETESSVSSPSERLSDEQDTPKSSPSSVQSPEISSKEAQDDNVKVK 63
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 8 NDSFVEDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNE--GKTT 181
N+ F+E + SP+++ P S + + +N++ D K + ++ +T+
Sbjct: 316 NNKFLELNNSTSPDRMEPPSTQGHTVAGHAESGNENIDTARPEGRDSAKRRRSKSYAETS 375
Query: 182 SVSIKEDLFLGLELEKSSTDNKKSEQ 259
S S ++ L+ + T+ K+ +Q
Sbjct: 376 SSSTAVEVLQRLQEKSEKTELKQDQQ 401
>03_01_0017 -
148934-148999,149000-149074,149343-149408,149737-149793,
150422-150537,150821-151103,151413-151468,151585-151682,
152233-152291,152747-152818,152892-153077,153303-153305
Length = 378
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 47 EKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGK 175
EK + S + +TVK+++E Q E K DD + S EG+
Sbjct: 181 EKKVAESENSPATVKSKTEKQQENELHEKRMDDSQECMSEEGR 223
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 47 EKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKE--DLFLGLE 220
E+L+ +++V +N+Q +E + + + + E +TTS ++ E GL
Sbjct: 1303 EELVKEVECAKNSVYQLQDNIQRLEQNASAREADLLTERQEKETTSKALAEAQAKIEGL- 1361
Query: 221 LEKSSTDNKKSE 256
LE+ S+ NKK++
Sbjct: 1362 LEEISSANKKTD 1373
>08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138
Length = 275
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 698 VFIWLTACSGFYTNCGFNMIWNV 630
V ++L CS +TN F+ IWNV
Sbjct: 237 VAVYLLKCSFTFTNFSFDFIWNV 259
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 670 PEQAVNHIKTLCKSLDSILR 729
P A+NHI LCKS+D+ +R
Sbjct: 46 PLMALNHISRLCKSIDASVR 65
>04_04_1197 +
31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 673 EQAVNHIKTLCKSLDSILRRDGTNPDEN 756
E+AVN + LC+S S R GT P N
Sbjct: 277 EEAVNEVMRLCRSSSSNQSRQGTPPATN 304
>01_06_0121 +
26646288-26647025,26648466-26648494,26649387-26649434,
26650398-26650558,26650945-26651268,26651703-26651854
Length = 483
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 816 PRRELD*NSSRCQLSLTGPYVLIWVSTVPTKNTVQRFTKGFYMVNSLFWLLHQLR 652
PRR + N + L+ V + +S+ ++ V F K FY N++ W L R
Sbjct: 217 PRRIVVANCGDSRAVLSRGGVAVPLSSDHKESRVANFAKNFYNANAMLWTLDSAR 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,325,858
Number of Sequences: 37544
Number of extensions: 269531
Number of successful extensions: 759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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