Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1584
(821 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09) 32 0.49
SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4) 32 0.49
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 32 0.65
SB_59485| Best HMM Match : Dickkopf_N (HMM E-Value=0.2) 31 0.85
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 31 0.85
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 30 2.6
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058) 30 2.6
SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6) 29 4.6
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2) 29 6.0
SB_35735| Best HMM Match : FF (HMM E-Value=2.29995e-41) 28 8.0
>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
Length = 1487
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -2
Query: 571 SLISFKNIEMNPLILTSSDTTDEPKFLFH 485
SL++ KN+E +PL+ TS+DTT PK H
Sbjct: 8 SLVTEKNVENSPLV-TSTDTTTNPKVTKH 35
>SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)
Length = 263
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -2
Query: 571 SLISFKNIEMNPLILTSSDTTDEPKFLFH 485
SL++ KN+E +PL+ TS+DTT PK H
Sbjct: 8 SLVTEKNVENSPLV-TSTDTTTNPKVTKH 35
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 31.9 bits (69), Expect = 0.65
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 26 DISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTS 184
D+ S +++ PSS D +T NQ + + P +SDDQ+ +++ TTS
Sbjct: 530 DVPTTSDDQVTPSSSDVPTTSDNQV--TPSASDVPTTSDDQVTPSASDVPTTS 580
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 26 DISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTS 184
D+ S +++ PS+ D +T NQ + + P +SDDQ+ +++ TTS
Sbjct: 708 DVPSASDDQVTPSAIDVPTTSDNQV--TPSASDVPTASDDQVTPSASDVPTTS 758
>SB_59485| Best HMM Match : Dickkopf_N (HMM E-Value=0.2)
Length = 450
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 47 EKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELE 226
E++ P++ + R K + +NV+N ++ GKTT I F+ +E E
Sbjct: 319 EEIKPNTTEERDNQKG-AHVAENVKNAKGDTEQNKSPPEPGGKTTDSPITNSTFMPIENE 377
Query: 227 KSSTDNKKS 253
DNK S
Sbjct: 378 TIKPDNKGS 386
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 31.5 bits (68), Expect = 0.85
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +2
Query: 35 RVSPEKLIPSSPDRRSTV-KNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFL 211
R +P++ SSP S +NQ ++ E TP+SS D SN+ + S S E
Sbjct: 403 RTNPDRRRKSSPPSASEKDRNQRKDKAKREPTPESSSDSSDDSSNDSDSGSESEDESSSE 462
Query: 212 GLELE-KSSTDNKKSEQN 262
E K S+ KK QN
Sbjct: 463 SAEENTKISSSVKKGLQN 480
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +2
Query: 77 RSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNK-KS 253
++ KN+ + +N ++ K + D+ K ++ K KE+ E + + +NK K+
Sbjct: 391 KNKTKNKKDKTKNNKDKTKENKDKTKENKDKTKNNKDKTKENKDKTKENKDKTKENKDKT 450
Query: 254 EQNKY*KMKKNLTKMMILQQSTPANQ 331
++NK K K+N K + T N+
Sbjct: 451 KENKD-KTKENKDKTKENKDKTKENK 475
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/87 (22%), Positives = 39/87 (44%)
Frame = +2
Query: 71 DRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKK 250
++ T +N+ + +N + T K + D+ K ++ K KE+ E + + +NK
Sbjct: 439 NKDKTKENKDKTKENKDKT-KENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKD 497
Query: 251 SEQNKY*KMKKNLTKMMILQQSTPANQ 331
+N K K+N K + T N+
Sbjct: 498 KTKNNKDKTKENKDKTNENKDKTKENK 524
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 571 SLISFKNIEMNPLILTSSDTTDEPKFLFH 485
SL++ KN+E +PL TS+DTT PK H
Sbjct: 8 SLVTEKNVENSPLD-TSTDTTTNPKVTKH 35
>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
Length = 1299
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 26 DISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTS 184
D+ S +++ PS+ D +T + + + + P +SDDQ+ + +++ TTS
Sbjct: 554 DVPTTSDDQITPSASDVPTT--SDDKVTLSASDVPTTSDDQVTLSASDVPTTS 604
>SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 41 SPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQI-KIQSNEGKTTSVSIKEDLFLGL 217
SP+++ SP + +++++V TP+S DD + Q+ G +S D L L
Sbjct: 619 SPQRVTSVSPQTPKVAFDTDQDMRDVSATPESGDDFVDATQTPPGPESS----RDNSLKL 674
Query: 218 ELEKSSTDNKKSEQ 259
EL +S D + Q
Sbjct: 675 ELSPTSEDEETEVQ 688
>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
Length = 1130
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +2
Query: 35 RVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLG 214
+ S E + S T + +E+ V ++ KSS ++ + + K+ ++ G
Sbjct: 645 KFSEESHVTSKSSHGQTERAHTEDKATV-SSEKSSGEKGEGNKRQSKSIISKLRPGSIHG 703
Query: 215 LELEKSSTDNKKSEQNKY*KMKKNL 289
E +K+ TD+ K + K K KK++
Sbjct: 704 KEKKKTDTDSDKKFRRKSSKQKKDV 728
>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
Length = 374
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +2
Query: 20 VEDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEG-----KTTS 184
+E+ R++ E++ + + + + E V+ E K+ + + K + K
Sbjct: 185 IEEAVRIAQEEMRREREEEENRILEEEERVKREEEEKKAKEVEEKRMGEDEEQIKLKEEE 244
Query: 185 VSIKEDLFLGLELEKSSTDNKKSEQ 259
V IKED LELE+++ + +++
Sbjct: 245 VEIKEDKTAELELEETTEKSNHAKR 269
Score = 28.3 bits (60), Expect = 8.0
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Frame = +2
Query: 38 VSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTS----------- 184
+SP K+ ++ T KN+ +NV+ E +++ +Q K+
Sbjct: 272 LSPSKIHKKDREKTPTKKNKEKNVKKNEEKDVQKEEEKDVQKKVEKSAKHLPQKKPESKK 331
Query: 185 -VSIKEDLFLGLELEKSSTDNKKSEQNKY*KMKK 283
K+DL G +L++ +D +K E+ K K+KK
Sbjct: 332 HEQTKKDL-KGRKLKRQLSDKEKIEEIKKEKLKK 364
>SB_35735| Best HMM Match : FF (HMM E-Value=2.29995e-41)
Length = 251
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 182 SVSIKEDLFLGL--ELEKSSTDNKKSEQNKY*KMKKNLTK 295
SVS KED F+ ELEK +K+ ++ K +M+ ++ K
Sbjct: 38 SVSTKEDYFMQFMEELEKKENSDKEKQKAKMERMEASMRK 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,785,291
Number of Sequences: 59808
Number of extensions: 339608
Number of successful extensions: 1305
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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