BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1584 (821 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC090932-1|AAH90932.1| 1377|Homo sapiens NIN protein protein. 31 6.7 AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein. 31 6.7 AY027796-1|AAK27377.1| 530|Homo sapiens ninein centrosomal prot... 31 6.7 AY027795-1|AAK27376.1| 573|Homo sapiens ninein centrosomal prot... 31 6.7 AY027794-1|AAK27375.1| 573|Homo sapiens ninein centrosomal prot... 31 6.7 AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein. 31 6.7 AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein. 31 6.7 AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein. 31 6.7 AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein. 31 6.7 AF212162-1|AAF23015.2| 2096|Homo sapiens ninein protein. 31 6.7 AF186776-1|AAG17027.1| 573|Homo sapiens ninein centrosomal prot... 31 6.7 AB046785-1|BAB13391.2| 1313|Homo sapiens KIAA1565 protein protein. 31 6.7 >BC090932-1|AAH90932.1| 1377|Homo sapiens NIN protein protein. Length = 1377 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 871 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 924 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 925 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 960 >AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein. Length = 1989 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 1584 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1637 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 1638 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1673 >AY027796-1|AAK27377.1| 530|Homo sapiens ninein centrosomal protein isoform C protein. Length = 530 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 24 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 78 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113 >AY027795-1|AAK27376.1| 573|Homo sapiens ninein centrosomal protein isoform B protein. Length = 573 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 24 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 78 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113 >AY027794-1|AAK27375.1| 573|Homo sapiens ninein centrosomal protein isoform A protein. Length = 573 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 24 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 78 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113 >AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein. Length = 2090 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 1584 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1637 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 1638 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1673 >AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein. Length = 2073 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1620 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 1621 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1656 >AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein. Length = 2069 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1620 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 1621 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1656 >AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein. Length = 2029 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1620 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 1621 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1656 >AF212162-1|AAF23015.2| 2096|Homo sapiens ninein protein. Length = 2096 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 1590 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1643 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 1644 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1679 >AF186776-1|AAG17027.1| 573|Homo sapiens ninein centrosomal protein protein. Length = 573 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 24 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 78 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113 >AB046785-1|BAB13391.2| 1313|Homo sapiens KIAA1565 protein protein. Length = 1313 Score = 30.7 bits (66), Expect = 6.7 Identities = 25/98 (25%), Positives = 50/98 (51%) Frame = +2 Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265 +KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K Sbjct: 908 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 961 Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379 + +K+ L + + Q ST + + S+ + IVQ Sbjct: 962 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 997 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 90,137,744 Number of Sequences: 237096 Number of extensions: 1602113 Number of successful extensions: 3441 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3298 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3429 length of database: 76,859,062 effective HSP length: 89 effective length of database: 55,757,518 effective search space used: 10259383312 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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