Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1584
(821 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC090932-1|AAH90932.1| 1377|Homo sapiens NIN protein protein. 31 6.7
AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein. 31 6.7
AY027796-1|AAK27377.1| 530|Homo sapiens ninein centrosomal prot... 31 6.7
AY027795-1|AAK27376.1| 573|Homo sapiens ninein centrosomal prot... 31 6.7
AY027794-1|AAK27375.1| 573|Homo sapiens ninein centrosomal prot... 31 6.7
AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein. 31 6.7
AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein. 31 6.7
AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein. 31 6.7
AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein. 31 6.7
AF212162-1|AAF23015.2| 2096|Homo sapiens ninein protein. 31 6.7
AF186776-1|AAG17027.1| 573|Homo sapiens ninein centrosomal prot... 31 6.7
AB046785-1|BAB13391.2| 1313|Homo sapiens KIAA1565 protein protein. 31 6.7
>BC090932-1|AAH90932.1| 1377|Homo sapiens NIN protein protein.
Length = 1377
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 871 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 924
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 925 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 960
>AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein.
Length = 1989
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 1584 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1637
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 1638 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1673
>AY027796-1|AAK27377.1| 530|Homo sapiens ninein centrosomal protein
isoform C protein.
Length = 530
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 24 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 78 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113
>AY027795-1|AAK27376.1| 573|Homo sapiens ninein centrosomal protein
isoform B protein.
Length = 573
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 24 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 78 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113
>AY027794-1|AAK27375.1| 573|Homo sapiens ninein centrosomal protein
isoform A protein.
Length = 573
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 24 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 78 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113
>AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein.
Length = 2090
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 1584 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1637
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 1638 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1673
>AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein.
Length = 2073
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1620
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 1621 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1656
>AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein.
Length = 2069
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1620
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 1621 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1656
>AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein.
Length = 2029
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1620
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 1621 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1656
>AF212162-1|AAF23015.2| 2096|Homo sapiens ninein protein.
Length = 2096
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 1590 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1643
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 1644 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1679
>AF186776-1|AAG17027.1| 573|Homo sapiens ninein centrosomal protein
protein.
Length = 573
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 24 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 78 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113
>AB046785-1|BAB13391.2| 1313|Homo sapiens KIAA1565 protein protein.
Length = 1313
Score = 30.7 bits (66), Expect = 6.7
Identities = 25/98 (25%), Positives = 50/98 (51%)
Frame = +2
Query: 86 VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
+KNQ +++N E + K+S +Q K+Q + T + ++ E E ++ ++ EQ K
Sbjct: 908 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 961
Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
+ +K+ L + + Q ST + + S+ + IVQ
Sbjct: 962 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 997
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,137,744
Number of Sequences: 237096
Number of extensions: 1602113
Number of successful extensions: 3441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3429
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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