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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1584
         (821 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC090932-1|AAH90932.1| 1377|Homo sapiens NIN protein protein.          31   6.7  
AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein.     31   6.7  
AY027796-1|AAK27377.1|  530|Homo sapiens ninein centrosomal prot...    31   6.7  
AY027795-1|AAK27376.1|  573|Homo sapiens ninein centrosomal prot...    31   6.7  
AY027794-1|AAK27375.1|  573|Homo sapiens ninein centrosomal prot...    31   6.7  
AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein.    31   6.7  
AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein.     31   6.7  
AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein.     31   6.7  
AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein.     31   6.7  
AF212162-1|AAF23015.2| 2096|Homo sapiens ninein protein.               31   6.7  
AF186776-1|AAG17027.1|  573|Homo sapiens ninein centrosomal prot...    31   6.7  
AB046785-1|BAB13391.2| 1313|Homo sapiens KIAA1565 protein protein.     31   6.7  

>BC090932-1|AAH90932.1| 1377|Homo sapiens NIN protein protein.
          Length = 1377

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86   VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
            +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 871  IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 924

Query: 266  Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
            +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 925  F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 960


>AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein.
          Length = 1989

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86   VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
            +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 1584 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1637

Query: 266  Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
            +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 1638 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1673


>AY027796-1|AAK27377.1|  530|Homo sapiens ninein centrosomal protein
           isoform C protein.
          Length = 530

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86  VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
           +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 24  IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77

Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
           +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 78  F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113


>AY027795-1|AAK27376.1|  573|Homo sapiens ninein centrosomal protein
           isoform B protein.
          Length = 573

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86  VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
           +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 24  IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77

Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
           +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 78  F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113


>AY027794-1|AAK27375.1|  573|Homo sapiens ninein centrosomal protein
           isoform A protein.
          Length = 573

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86  VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
           +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 24  IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77

Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
           +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 78  F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113


>AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein.
          Length = 2090

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86   VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
            +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 1584 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1637

Query: 266  Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
            +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 1638 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1673


>AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein.
          Length = 2073

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86   VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
            +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1620

Query: 266  Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
            +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 1621 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1656


>AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein.
          Length = 2069

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86   VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
            +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1620

Query: 266  Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
            +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 1621 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1656


>AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein.
          Length = 2029

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86   VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
            +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 1567 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1620

Query: 266  Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
            +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 1621 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1656


>AF212162-1|AAF23015.2| 2096|Homo sapiens ninein protein.
          Length = 2096

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86   VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
            +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 1590 IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 1643

Query: 266  Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
            +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 1644 F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 1679


>AF186776-1|AAG17027.1|  573|Homo sapiens ninein centrosomal protein
           protein.
          Length = 573

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86  VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
           +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 24  IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 77

Query: 266 Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
           +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 78  F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 113


>AB046785-1|BAB13391.2| 1313|Homo sapiens KIAA1565 protein protein.
          Length = 1313

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 86   VKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
            +KNQ  +++N E + K+S +Q K+Q    + T +  ++      E E  ++  ++ EQ K
Sbjct: 908  IKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK------EKEPGNSALEEREQEK 961

Query: 266  Y*KMKKNLTKMMILQQSTPANQK**DYSQNVLNLRIVQ 379
            +  +K+ L +  + Q ST  +    + S+  +   IVQ
Sbjct: 962  F-NLKEELERCKV-QSSTLVSSLEAELSEVKIQTHIVQ 997


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,137,744
Number of Sequences: 237096
Number of extensions: 1602113
Number of successful extensions: 3441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3429
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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