Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1584
         (821 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             34   0.099
At5g46020.1 68418.m05659 expressed protein                             32   0.53 
At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)...    31   0.70 
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r...    31   1.2  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    30   2.1  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    30   2.1  
At1g23710.1 68414.m02993 expressed protein                             29   2.8  
At2g24930.1 68415.m02981 Ulp1 protease family protein contains P...    29   3.7  
At3g02930.1 68416.m00288 expressed protein  ; expression support...    29   4.9  
At5g08540.1 68418.m01016 expressed protein similar to unknown pr...    28   6.5  
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil...    28   6.5  
At3g44200.1 68416.m04739 protein kinase family protein contains ...    28   8.6  
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r...    28   8.6  
At1g79140.1 68414.m09228 expressed protein                             28   8.6  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +2

Query: 47   EKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELE 226
            EKL   + +++   KN+ +  Q+V+   K SD + K + NE K+ +  I+       E++
Sbjct: 1121 EKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEK-KENEEKSETKEIESSKSQKNEVD 1179

Query: 227  KSSTDNKKSEQNKY*K-MKKNLTKMM 301
            K    + K +Q K  K MK++  K +
Sbjct: 1180 KKEKKSSKDQQKKKEKEMKESEEKKL 1205


>At5g46020.1 68418.m05659 expressed protein
          Length = 164

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
 Frame = +2

Query: 17  FVEDISRVSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQS-NEGKTTSVSI 193
           + ED+   S E+    S D     K  +E V  V+N  +     +K +  +  KTT +S 
Sbjct: 41  YEEDVEEESEEESEEESEDEADVKKKGAEAVIEVDNPNRVRQKTLKAKDLDASKTTELSR 100

Query: 194 KEDLFLGLELEKSSTDN---KKSEQNKY*KMKKNLTKMMILQQ 313
           +E      ELEK        +  EQ K  + +K+L ++ +++Q
Sbjct: 101 RE----REELEKQRAHERYMRLQEQGKTEQARKDLDRLALIRQ 139


>At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)
           identical to ATMYC1 GI:1853965 from [Arabidopsis
           thaliana]
          Length = 526

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 74  RRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKED 202
           +R T +N +++V  +E T  + DD  KI  N G+T  V++  D
Sbjct: 402 QRKTTENLNDSVL-IEETSGNYDDSTKIDDNSGETEQVTVFRD 443


>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1122

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/35 (31%), Positives = 25/35 (71%)
 Frame = +3

Query: 492 RNFGSSVVSDEVKIKGFISMFLKEINETYQEVMTL 596
           RNF +++VSD + ++G  S  L+++  + +EV+++
Sbjct: 861 RNFFTAIVSDGINVEGVYSCLLRDLLASLEEVISM 895


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 558 KEINETYQEVMTLCDTSYKDLLDNNIPNHIKT 653
           K  N+TY E  TL  T+Y ++  +N+ +  KT
Sbjct: 63  KRPNQTYNEAATLLSTAYPNIFSSNLSSKQKT 94


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 558 KEINETYQEVMTLCDTSYKDLLDNNIPNHIKT 653
           K  N+TY E  TL  T+Y ++  +N+ +  KT
Sbjct: 63  KRPNQTYNEAATLLSTAYPNIFSSNLSSKQKT 94


>At1g23710.1 68414.m02993 expressed protein
          Length = 295

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +1

Query: 265 VLENEKESDQNDDIAAVNSSKPKIIRLFTK 354
           + E E E D+ND+++  + ++P++ +LF +
Sbjct: 100 LFEYENEDDKNDNVSVTDENRPRLRKLFVE 129


>At2g24930.1 68415.m02981 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 926

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/74 (24%), Positives = 36/74 (48%)
 Frame = +2

Query: 113 NVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSSTDNKKSEQNKY*KMKKNLT 292
           ++EN  K   +Q+K  ++   + S S   D+FL     ++  DN+K++  K   + K +T
Sbjct: 414 SIENDVKQIKEQLKAIAD---SKSSSYIRDMFLSKPQPQTQEDNRKAQTQKTPDVPKKIT 470

Query: 293 KMMILQQSTPANQK 334
                  S P +++
Sbjct: 471 NNQSAAPSPPPSKQ 484


>At3g02930.1 68416.m00288 expressed protein  ; expression supported
           by MPSS
          Length = 806

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 59  PSSPDRRSTVKNQSENVQNVENTPKSSDDQIKIQSNEGKTTSVSIKEDLFLGLELEKSST 238
           P S   +  +K  +E + ++EN    + DQ+K    E +  S  + E     LE +K S 
Sbjct: 87  PQSVQIKEDLKKANELIASLENEKAKALDQLKEARKEAEEASEKLDE----ALEAQKKSL 142

Query: 239 DNKKSEQ 259
           +N + E+
Sbjct: 143 ENFEIEK 149


>At5g08540.1 68418.m01016 expressed protein similar to unknown
           protein (pir||T27191)
          Length = 346

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 616 TS*ITTFQIILKPQLV*KPEQAVNHIKTLCKSLDSILRRDGTNPDENIRAC*RK 777
           T+ + T Q    P+   + ++ VN    LC+S+D +LR+ GT     ++A  +K
Sbjct: 132 TAFVKTVQKFSSPKA--QRKKLVNQNAMLCRSIDELLRKAGTVHSSELKALEQK 183


>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
           transport factor 2 (NTF2) domain
          Length = 1294

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +2

Query: 104 NVQNVENTPKSSDDQIKIQSNEGKT------TSVSIKEDLFLGLELEKSSTDNKKSEQNK 265
           ++QN +     S++Q+K Q  EG+       TS  ++    +GLE E+   +N+  E+ +
Sbjct: 673 DLQNWQKIMNQSEEQMKFQEEEGRQYNQNRYTSEEVRGTEGVGLEEEEEEEENQNWEEQR 732


>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 38  VSPEKLIPSSPDRRSTVKNQSENVQNVENTPKSSDDQIK--IQSNEGKTT 181
           ++PEK + S   RRS  ++Q+ N  + ++    SD  I+  + SN  K T
Sbjct: 263 ITPEKPLNSREGRRSMAESQNSNSSSEKDNFYVSDKNIRYVVPSNGNKVT 312


>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1106

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 492 RNFGSSVVSDEVKIKGFISMFLKEINETYQEVMTL 596
           +NF ++ VS+E+K +G  S  L ++    +EV+++
Sbjct: 849 QNFFTAFVSEEIKTEGVYSYLLSDLLALLEEVLSM 883


>At1g79140.1 68414.m09228 expressed protein
          Length = 311

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +2

Query: 26  DISRVSPEKLIPSSPDRRSTVKNQSENV-QNVENTPKSSDDQIKIQSNEGKTTSVSIKED 202
           D S V  E   P +  R+   K + E++ +  +N P+    ++  +  E  T    IKED
Sbjct: 217 DFSLVK-ESFEPKNESRKLNNKRKRESLPEEAKNVPEIDMVKLSKKLKENFTILRDIKED 275

Query: 203 LFLGLELEKSSTDNKKSEQNKY*KMK 280
             + +EL +S       +QN   K K
Sbjct: 276 ERVRMELLQSEEKKPLKKQNNVVKKK 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,206,758
Number of Sequences: 28952
Number of extensions: 248177
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)