Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1583
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 36 0.008
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 34 0.023
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 34 0.023
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 31 0.22
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 29 0.88
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 28 1.5
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 28 1.5
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 1.5
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 27 2.0
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.7
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 27 2.7
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 2.7
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.7
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 3.6
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 27 3.6
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 26 4.7
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 4.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 4.7
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 6.2
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 8.2
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 8.2
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 8.2
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 556 DFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
D S D R + S +GK + TG D ++++W ++ YV +++ LDF
Sbjct: 356 DPSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDF 410
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.9 bits (74), Expect = 0.023
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
R V S +GK +ATG D ++R+W + + +L +E+ LDF
Sbjct: 338 RSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDF 384
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWTF 657
V +S NG ATG D + R+W++
Sbjct: 560 VAVSPNGHCFATGSGDLRARIWSY 583
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 33.9 bits (74), Expect = 0.023
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 117 VDFPLYTLQTLTNRHVIVAGGGGASNTGVANGFEI 221
+ FP Y+L + N + V GGGG + +GV N ++
Sbjct: 6 LSFPAYSLCWINNHQMAVGGGGGTTKSGVKNKLKL 40
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 583 VVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
+VR SNNG A+G +V+VW + + + T + LD+
Sbjct: 177 IVRFSNNGNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDW 222
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 28.7 bits (61), Expect = 0.88
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 601 NGKLMATGGIDTKVRVW 651
NG ++ATGG DT +VW
Sbjct: 311 NGNILATGGQDTTAKVW 327
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 592 ISNNGKLMATGGIDTKVRVW 651
IS +GK +AT G D +RVW
Sbjct: 194 ISKSGKYLATAGKDAIIRVW 213
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWT 654
+ I +G +ATGG+D +R+W+
Sbjct: 24 IHIHPDGSRIATGGLDGTIRIWS 46
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 562 SNDPLQRVVRISNNGKLMATGGIDTKVRVW 651
S+DP ++ +++ G + T G D VRVW
Sbjct: 335 SDDPETSLLNVTSLGPFIITSGTDPYVRVW 364
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
V+ + K +A+ D +R+W F K + L+ T + +DF
Sbjct: 102 VKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDF 146
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVW 651
S +G +ATGG+D++VR+W
Sbjct: 113 SFDGTYIATGGMDSQVRLW 131
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 610 LMATGGIDTKVRVWTFPKMELLYVL 684
L +GG D KV VW + +LL+ L
Sbjct: 67 LFVSGGDDYKVNVWNYKSRKLLFSL 91
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVW 651
+R + + ++A+G D+KVR+W
Sbjct: 104 IRYNEDSSILASGSFDSKVRLW 125
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 141 QTLTNRHVIVAGGGGASNTGV 203
+TLT RH+ + G GGA TGV
Sbjct: 81 RTLTARHIQMIGIGGAIGTGV 101
>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 100
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +1
Query: 532 RPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELL 675
R C S DF++ L I NG+++ T ++ V + F + + +
Sbjct: 24 RVCISTAIDFTSPKLDEFSLIMENGEILLTSWLNRSVHIEIFDERKFI 71
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLE 687
++ R D ++T PL V I+ G + GGID +++W +VL+
Sbjct: 163 WDSRSKDCIKTIEEKYPLTAVA-IAQQGTQVFIGGIDGAIKIWDLRNNHCSHVLK 216
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 434 GLVRRRRRTVSENDNISKKNNV 499
G VRR VS ND ++KKN++
Sbjct: 456 GTVRRPPSLVSSNDELNKKNDI 477
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 334 PHSGTREPLSAVQGEHPHGG 393
PHSG + L+ VQG+ +GG
Sbjct: 1157 PHSGVLKSLAVVQGDSVNGG 1176
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELL 675
S +GK +A GG D V +++FP +L+
Sbjct: 373 SPDGKFIAIGGKDDLVSIYSFPLRKLV 399
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 479 ISKKNNVSNTR-KECHLKSDLVIVCRLTLVMIHC 577
IS+ N+ S + K+ HLKS +V+ C L L+M++C
Sbjct: 1596 ISRFNSQSVFKSKKHHLKS-IVVKCTLQLLMLNC 1628
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
V I+ + + + G D K+R+W ELL L + + + F
Sbjct: 623 VTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTF 667
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWT 654
S +G+ +A+GG D VR+W+
Sbjct: 482 SPDGQRVASGGADKAVRIWS 501
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 565 NDPLQRVVRISNNGKLMATGGIDTKVRVWTF 657
++ L R VR N + + +GG D VR+W F
Sbjct: 428 HEDLIRTVRF--NDEKIVSGGYDGTVRIWNF 456
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 580 RVVRISNNGKLMATGGIDTKVRVWTF 657
R++R+SN + GI+ KV TF
Sbjct: 85 RIIRVSNRSHVRTIDGIEEKVHTNTF 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,462
Number of Sequences: 5004
Number of extensions: 64073
Number of successful extensions: 283
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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