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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1583
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    36   0.008
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    34   0.023
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    34   0.023
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    31   0.22 
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    29   0.88 
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    28   1.5  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    28   1.5  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    28   1.5  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    27   2.0  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   2.7  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    27   2.7  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   2.7  
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    27   3.6  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   3.6  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   4.7  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   4.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.7  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   6.2  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   8.2  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   8.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   8.2  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 556 DFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
           D S D   R +  S +GK + TG  D ++++W     ++ YV     +++  LDF
Sbjct: 356 DPSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDF 410


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
           R V  S +GK +ATG  D ++R+W   +  +  +L    +E+  LDF
Sbjct: 338 RSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDF 384



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 586 VRISNNGKLMATGGIDTKVRVWTF 657
           V +S NG   ATG  D + R+W++
Sbjct: 560 VAVSPNGHCFATGSGDLRARIWSY 583


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 117 VDFPLYTLQTLTNRHVIVAGGGGASNTGVANGFEI 221
           + FP Y+L  + N  + V GGGG + +GV N  ++
Sbjct: 6   LSFPAYSLCWINNHQMAVGGGGGTTKSGVKNKLKL 40


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 583 VVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
           +VR SNNG   A+G    +V+VW    +  + +    T  +  LD+
Sbjct: 177 IVRFSNNGNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDW 222


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 601 NGKLMATGGIDTKVRVW 651
           NG ++ATGG DT  +VW
Sbjct: 311 NGNILATGGQDTTAKVW 327


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 592 ISNNGKLMATGGIDTKVRVW 651
           IS +GK +AT G D  +RVW
Sbjct: 194 ISKSGKYLATAGKDAIIRVW 213


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 586 VRISNNGKLMATGGIDTKVRVWT 654
           + I  +G  +ATGG+D  +R+W+
Sbjct: 24  IHIHPDGSRIATGGLDGTIRIWS 46


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 562 SNDPLQRVVRISNNGKLMATGGIDTKVRVW 651
           S+DP   ++ +++ G  + T G D  VRVW
Sbjct: 335 SDDPETSLLNVTSLGPFIITSGTDPYVRVW 364



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
           V+ +   K +A+   D  +R+W F K   +  L+  T  +  +DF
Sbjct: 102 VKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDF 146


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 595 SNNGKLMATGGIDTKVRVW 651
           S +G  +ATGG+D++VR+W
Sbjct: 113 SFDGTYIATGGMDSQVRLW 131


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 610 LMATGGIDTKVRVWTFPKMELLYVL 684
           L  +GG D KV VW +   +LL+ L
Sbjct: 67  LFVSGGDDYKVNVWNYKSRKLLFSL 91


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 586 VRISNNGKLMATGGIDTKVRVW 651
           +R + +  ++A+G  D+KVR+W
Sbjct: 104 IRYNEDSSILASGSFDSKVRLW 125


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 141 QTLTNRHVIVAGGGGASNTGV 203
           +TLT RH+ + G GGA  TGV
Sbjct: 81  RTLTARHIQMIGIGGAIGTGV 101


>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 532 RPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELL 675
           R C S   DF++  L     I  NG+++ T  ++  V +  F + + +
Sbjct: 24  RVCISTAIDFTSPKLDEFSLIMENGEILLTSWLNRSVHIEIFDERKFI 71


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLE 687
           ++ R  D ++T     PL  V  I+  G  +  GGID  +++W        +VL+
Sbjct: 163 WDSRSKDCIKTIEEKYPLTAVA-IAQQGTQVFIGGIDGAIKIWDLRNNHCSHVLK 216


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 434 GLVRRRRRTVSENDNISKKNNV 499
           G VRR    VS ND ++KKN++
Sbjct: 456 GTVRRPPSLVSSNDELNKKNDI 477


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 334  PHSGTREPLSAVQGEHPHGG 393
            PHSG  + L+ VQG+  +GG
Sbjct: 1157 PHSGVLKSLAVVQGDSVNGG 1176


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELL 675
           S +GK +A GG D  V +++FP  +L+
Sbjct: 373 SPDGKFIAIGGKDDLVSIYSFPLRKLV 399


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +2

Query: 479  ISKKNNVSNTR-KECHLKSDLVIVCRLTLVMIHC 577
            IS+ N+ S  + K+ HLKS +V+ C L L+M++C
Sbjct: 1596 ISRFNSQSVFKSKKHHLKS-IVVKCTLQLLMLNC 1628


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
           V I+ + +   + G D K+R+W     ELL  L   +  +  + F
Sbjct: 623 VTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTF 667


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 595 SNNGKLMATGGIDTKVRVWT 654
           S +G+ +A+GG D  VR+W+
Sbjct: 482 SPDGQRVASGGADKAVRIWS 501


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 NDPLQRVVRISNNGKLMATGGIDTKVRVWTF 657
           ++ L R VR   N + + +GG D  VR+W F
Sbjct: 428 HEDLIRTVRF--NDEKIVSGGYDGTVRIWNF 456


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 580 RVVRISNNGKLMATGGIDTKVRVWTF 657
           R++R+SN   +    GI+ KV   TF
Sbjct: 85  RIIRVSNRSHVRTIDGIEEKVHTNTF 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,462
Number of Sequences: 5004
Number of extensions: 64073
Number of successful extensions: 283
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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