BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1583 (720 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 36 0.008 SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 34 0.023 SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 34 0.023 SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 31 0.22 SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 29 0.88 SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 28 1.5 SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 28 1.5 SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 1.5 SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 27 2.0 SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.7 SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 27 2.7 SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 2.7 SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.7 SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 3.6 SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 27 3.6 SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 26 4.7 SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 4.7 SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 4.7 SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 6.2 SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 8.2 SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 8.2 SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 8.2 >SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosaccharomyces pombe|chr 1|||Manual Length = 614 Score = 35.5 bits (78), Expect = 0.008 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +1 Query: 556 DFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720 D S D R + S +GK + TG D ++++W ++ YV +++ LDF Sbjct: 356 DPSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDF 410 >SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosaccharomyces pombe|chr 1|||Manual Length = 586 Score = 33.9 bits (74), Expect = 0.023 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +1 Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720 R V S +GK +ATG D ++R+W + + +L +E+ LDF Sbjct: 338 RSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDF 384 Score = 27.9 bits (59), Expect = 1.5 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +1 Query: 586 VRISNNGKLMATGGIDTKVRVWTF 657 V +S NG ATG D + R+W++ Sbjct: 560 VAVSPNGHCFATGSGDLRARIWSY 583 >SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 33.9 bits (74), Expect = 0.023 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 117 VDFPLYTLQTLTNRHVIVAGGGGASNTGVANGFEI 221 + FP Y+L + N + V GGGG + +GV N ++ Sbjct: 6 LSFPAYSLCWINNHQMAVGGGGGTTKSGVKNKLKL 40 >SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 462 Score = 30.7 bits (66), Expect = 0.22 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +1 Query: 583 VVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720 +VR SNNG A+G +V+VW + + + T + LD+ Sbjct: 177 IVRFSNNGNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDW 222 >SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 28.7 bits (61), Expect = 0.88 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 601 NGKLMATGGIDTKVRVW 651 NG ++ATGG DT +VW Sbjct: 311 NGNILATGGQDTTAKVW 327 >SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 586 Score = 27.9 bits (59), Expect = 1.5 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 592 ISNNGKLMATGGIDTKVRVW 651 IS +GK +AT G D +RVW Sbjct: 194 ISKSGKYLATAGKDAIIRVW 213 >SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces pombe|chr 2|||Manual Length = 932 Score = 27.9 bits (59), Expect = 1.5 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +1 Query: 586 VRISNNGKLMATGGIDTKVRVWT 654 + I +G +ATGG+D +R+W+ Sbjct: 24 IHIHPDGSRIATGGLDGTIRIWS 46 >SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 27.9 bits (59), Expect = 1.5 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +1 Query: 562 SNDPLQRVVRISNNGKLMATGGIDTKVRVW 651 S+DP ++ +++ G + T G D VRVW Sbjct: 335 SDDPETSLLNVTSLGPFIITSGTDPYVRVW 364 Score = 27.1 bits (57), Expect = 2.7 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = +1 Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720 V+ + K +A+ D +R+W F K + L+ T + +DF Sbjct: 102 VKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDF 146 >SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharomyces pombe|chr 1|||Manual Length = 399 Score = 27.5 bits (58), Expect = 2.0 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +1 Query: 595 SNNGKLMATGGIDTKVRVW 651 S +G +ATGG+D++VR+W Sbjct: 113 SFDGTYIATGGMDSQVRLW 131 >SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 1207 Score = 27.1 bits (57), Expect = 2.7 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 Query: 610 LMATGGIDTKVRVWTFPKMELLYVL 684 L +GG D KV VW + +LL+ L Sbjct: 67 LFVSGGDDYKVNVWNYKSRKLLFSL 91 >SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 297 Score = 27.1 bits (57), Expect = 2.7 Identities = 8/22 (36%), Positives = 16/22 (72%) Frame = +1 Query: 586 VRISNNGKLMATGGIDTKVRVW 651 +R + + ++A+G D+KVR+W Sbjct: 104 IRYNEDSSILASGSFDSKVRLW 125 >SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces pombe|chr 1|||Manual Length = 580 Score = 27.1 bits (57), Expect = 2.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 141 QTLTNRHVIVAGGGGASNTGV 203 +TLT RH+ + G GGA TGV Sbjct: 81 RTLTARHIQMIGIGGAIGTGV 101 >SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 100 Score = 27.1 bits (57), Expect = 2.7 Identities = 12/48 (25%), Positives = 23/48 (47%) Frame = +1 Query: 532 RPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELL 675 R C S DF++ L I NG+++ T ++ V + F + + + Sbjct: 24 RVCISTAIDFTSPKLDEFSLIMENGEILLTSWLNRSVHIEIFDERKFI 71 >SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces pombe|chr 2|||Manual Length = 340 Score = 26.6 bits (56), Expect = 3.6 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +1 Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLE 687 ++ R D ++T PL V I+ G + GGID +++W +VL+ Sbjct: 163 WDSRSKDCIKTIEEKYPLTAVA-IAQQGTQVFIGGIDGAIKIWDLRNNHCSHVLK 216 >SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr 3|||Manual Length = 505 Score = 26.6 bits (56), Expect = 3.6 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 434 GLVRRRRRTVSENDNISKKNNV 499 G VRR VS ND ++KKN++ Sbjct: 456 GTVRRPPSLVSSNDELNKKNDI 477 >SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pombe|chr 2|||Manual Length = 1185 Score = 26.2 bits (55), Expect = 4.7 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +1 Query: 334 PHSGTREPLSAVQGEHPHGG 393 PHSG + L+ VQG+ +GG Sbjct: 1157 PHSGVLKSLAVVQGDSVNGG 1176 >SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 543 Score = 26.2 bits (55), Expect = 4.7 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELL 675 S +GK +A GG D V +++FP +L+ Sbjct: 373 SPDGKFIAIGGKDDLVSIYSFPLRKLV 399 >SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 1811 Score = 26.2 bits (55), Expect = 4.7 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = +2 Query: 479 ISKKNNVSNTR-KECHLKSDLVIVCRLTLVMIHC 577 IS+ N+ S + K+ HLKS +V+ C L L+M++C Sbjct: 1596 ISRFNSQSVFKSKKHHLKS-IVVKCTLQLLMLNC 1628 >SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1|Schizosaccharomyces pombe|chr 2|||Manual Length = 775 Score = 25.8 bits (54), Expect = 6.2 Identities = 12/45 (26%), Positives = 21/45 (46%) Frame = +1 Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720 V I+ + + + G D K+R+W ELL L + + + F Sbjct: 623 VTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTF 667 >SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 502 Score = 25.4 bits (53), Expect = 8.2 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = +1 Query: 595 SNNGKLMATGGIDTKVRVWT 654 S +G+ +A+GG D VR+W+ Sbjct: 482 SPDGQRVASGGADKAVRIWS 501 >SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizosaccharomyces pombe|chr 1|||Manual Length = 506 Score = 25.4 bits (53), Expect = 8.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 565 NDPLQRVVRISNNGKLMATGGIDTKVRVWTF 657 ++ L R VR N + + +GG D VR+W F Sbjct: 428 HEDLIRTVRF--NDEKIVSGGYDGTVRIWNF 456 >SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces pombe|chr 1|||Manual Length = 1159 Score = 25.4 bits (53), Expect = 8.2 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +1 Query: 580 RVVRISNNGKLMATGGIDTKVRVWTF 657 R++R+SN + GI+ KV TF Sbjct: 85 RIIRVSNRSHVRTIDGIEEKVHTNTF 110 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,065,462 Number of Sequences: 5004 Number of extensions: 64073 Number of successful extensions: 283 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 252 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 283 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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