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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1583
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)                   33   0.18 
SB_48919| Best HMM Match : Kelch_2 (HMM E-Value=0.91)                  33   0.18 
SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                31   0.71 
SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15)                 31   0.71 
SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)                  30   1.6  
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)                  30   2.2  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   29   2.9  
SB_48670| Best HMM Match : AT_hook (HMM E-Value=3)                     29   3.8  
SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)              29   5.0  
SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_32323| Best HMM Match : WD40 (HMM E-Value=0)                        28   6.6  
SB_21478| Best HMM Match : Branch (HMM E-Value=0)                      28   6.6  
SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)                  28   8.8  

>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
          Length = 1272

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 547 VQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTK 699
           V  + +  P  R + +  +G+L+  GG    + VW+     LL++++ P K
Sbjct: 95  VPPEDAKTPHYRTLAVPRDGRLLVAGGRSRFLHVWSLENKRLLHIIQLPAK 145


>SB_48919| Best HMM Match : Kelch_2 (HMM E-Value=0.91)
          Length = 198

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 547 VQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTK 699
           V  + +  P  R + +  +G+L+  GG    + VW+     LL++++ P K
Sbjct: 87  VPPEDAKTPHYRTLAVPRDGRLLVAGGRSRFLHVWSLENKRLLHIIQLPAK 137


>SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 349

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 314 SIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRGSFRAENGLVRRRRRTVSENDNISKKN 493
           +++   +L AG+E             +A+  R     A   L  RRR+T  EN N +  N
Sbjct: 8   TVEQGKFLVAGEEVERNEKMAERHKTEASATRIRKENANAALADRRRKT-RENCNNNHNN 66

Query: 494 NVSNTRKECHLKS 532
           N +N   +C++ +
Sbjct: 67  NNNNISSDCNISN 79


>SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15)
          Length = 272

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 544 SVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELD 708
           S+  +  N  L R + +SNN KL A        R+    K E +++LEK  +ELD
Sbjct: 124 SLPLEIGNLKLLRSLNVSNNPKLDALPASLAYCRLLEDKKQEQMWMLEKQMRELD 178


>SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 984

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 589  RISNNGKLMATGGIDTKVRVW 651
            R S +G+L ATGG D KV+VW
Sbjct: 959  RFSISGRLFATGGGDKKVKVW 979


>SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/68 (30%), Positives = 37/68 (54%)
 Frame = +2

Query: 314 SIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRGSFRAENGLVRRRRRTVSENDNISKKN 493
           S+ N   LT   +S+  L K   + + AA M+    R      R+R+ +V+E+D+ SK+ 
Sbjct: 505 SLNNLNILTVS-DSYMSLLKK--KALKAARMKTYRRRKTIEQNRKRKASVAEDDHQSKRR 561

Query: 494 NVSNTRKE 517
            +S ++KE
Sbjct: 562 KLSKSKKE 569


>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
          Length = 685

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 595 SNNGKLMATGGIDTKVRVWTFP 660
           S +GKL+A+GG D  V +W +P
Sbjct: 480 SPDGKLLASGGNDNVVNIWPYP 501


>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 253 TNLFPLCDSSNISNPFATPVFDAPPPPATMT 161
           TNLF    SS  SN  A P+   PPPP ++T
Sbjct: 394 TNLFGPTQSSASSNFDAVPLASRPPPPYSLT 424


>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
          Length = 256

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 595 SNNGKLMATGGIDTKVRVWTF 657
           S +G L+A+GG+D  VRVW F
Sbjct: 190 SPDGTLLASGGMDGAVRVWDF 210


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135  TLQTLTNR-HVIVAGGGGASNTGVANG 212
            T++ +T R H++ +GG GA NTG   G
Sbjct: 2652 TVEKITGRGHILASGGKGAYNTGAGGG 2678


>SB_48670| Best HMM Match : AT_hook (HMM E-Value=3)
          Length = 207

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +2

Query: 374 VNIRMVDAAEMRRGSFRAENGLVRRRRR-------TVSENDNISKKNNVSNTRKECHLKS 532
           + +R V      R   R  NG V RR+R         + N  +  K  + NT++    +S
Sbjct: 93  IKLRRVPLKAPLRAPLRGRNGGVHRRKRGRPSGQGPAASNGPVVDKQGIPNTKEAKARES 152

Query: 533 DLVIVCRLTLV 565
           D+  V  LT+V
Sbjct: 153 DIHFVVTLTVV 163


>SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -2

Query: 599 LLILTTRCSGSLLKSVCTLS-QGLISNDILFLCY*H--CFSLIYYHFQRLSVSSASQAHS 429
           ++ LT   +  LLK+  T +  G+   +    CY +  C S IY H  +    S S  H 
Sbjct: 4   IIALTDVHNRKLLKNHTTFNITGIDEENCSVKCYLNDFCQSTIYNHTSKTCHISTSTRHQ 63

Query: 428 QPGNFL 411
            PG+F+
Sbjct: 64  HPGDFV 69


>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 586 VRISNNGKLMATGGIDTKVRVW 651
           VR S NGK +A+GG D  + +W
Sbjct: 32  VRWSGNGKYLASGGDDNLIMIW 53


>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 598 NNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
           + G++M TGG D KV +W   +  ++  L   T  ++ + F
Sbjct: 29  STGRVMVTGGEDRKVNMWAVGQPNVIMSLAGHTSPVECVQF 69


>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
          Length = 260

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 610 LMATGGIDTKVRVWTFPKMELLYVL 684
           L+ATGG D  + VWT   +E +Y L
Sbjct: 79  LIATGGHDNVILVWTLDSVEPIYSL 103


>SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 592 ISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKP 693
           I+ NG+++ + G D   RVW   +    +VL+ P
Sbjct: 170 IACNGRVLVSAGSDNCARVWDIKEARCTHVLDTP 203


>SB_32323| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 611

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
           ++ R C  ++    +D   R +       L  +GG D K++VW + +   L+ L
Sbjct: 36  WDYRMCTLLERFDEHDGPVRGINFHTVQPLFVSGGDDYKIKVWNYKQKRCLFTL 89


>SB_21478| Best HMM Match : Branch (HMM E-Value=0)
          Length = 666

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 446 RRRRTVSENDNISKKNNVSNTRK 514
           RRRR  SE   + KKNN  NT K
Sbjct: 69  RRRRRSSERKRVEKKNNEYNTPK 91


>SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -1

Query: 558 VSLHTITRSDFK*HSFLVLLTLFF---FDILSFSETVRLLRLTSPFSARKLPRLISAAST 388
           +  +T  ++D   H  L+ + LF    F   SFS+ VR  +++   S  + P      + 
Sbjct: 155 IDQNTFLKADLALHPTLITIILFITLAFLFRSFSKQVRRKKISRGLSNERFPNKRQTENI 214

Query: 387 MRMFTL 370
            R FT+
Sbjct: 215 ERQFTI 220


>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
          Length = 584

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELL 675
           S +GK + TGG D  + VW+F ++ ++
Sbjct: 325 SPDGKYVVTGGEDDLITVWSFHELRVI 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,442,347
Number of Sequences: 59808
Number of extensions: 510480
Number of successful extensions: 1583
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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