Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1583
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 33 0.18
SB_48919| Best HMM Match : Kelch_2 (HMM E-Value=0.91) 33 0.18
SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17) 31 0.71
SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15) 31 0.71
SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 30 1.6
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) 30 2.2
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 29 2.9
SB_48670| Best HMM Match : AT_hook (HMM E-Value=3) 29 3.8
SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) 29 5.0
SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_32323| Best HMM Match : WD40 (HMM E-Value=0) 28 6.6
SB_21478| Best HMM Match : Branch (HMM E-Value=0) 28 6.6
SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19) 28 8.8
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 547 VQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTK 699
V + + P R + + +G+L+ GG + VW+ LL++++ P K
Sbjct: 95 VPPEDAKTPHYRTLAVPRDGRLLVAGGRSRFLHVWSLENKRLLHIIQLPAK 145
>SB_48919| Best HMM Match : Kelch_2 (HMM E-Value=0.91)
Length = 198
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 547 VQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTK 699
V + + P R + + +G+L+ GG + VW+ LL++++ P K
Sbjct: 87 VPPEDAKTPHYRTLAVPRDGRLLVAGGRSRFLHVWSLENKRLLHIIQLPAK 137
>SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
Length = 349
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +2
Query: 314 SIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRGSFRAENGLVRRRRRTVSENDNISKKN 493
+++ +L AG+E +A+ R A L RRR+T EN N + N
Sbjct: 8 TVEQGKFLVAGEEVERNEKMAERHKTEASATRIRKENANAALADRRRKT-RENCNNNHNN 66
Query: 494 NVSNTRKECHLKS 532
N +N +C++ +
Sbjct: 67 NNNNISSDCNISN 79
>SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15)
Length = 272
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 544 SVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELD 708
S+ + N L R + +SNN KL A R+ K E +++LEK +ELD
Sbjct: 124 SLPLEIGNLKLLRSLNVSNNPKLDALPASLAYCRLLEDKKQEQMWMLEKQMRELD 178
>SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 984
Score = 31.1 bits (67), Expect = 0.94
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 589 RISNNGKLMATGGIDTKVRVW 651
R S +G+L ATGG D KV+VW
Sbjct: 959 RFSISGRLFATGGGDKKVKVW 979
>SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +2
Query: 314 SIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRGSFRAENGLVRRRRRTVSENDNISKKN 493
S+ N LT +S+ L K + + AA M+ R R+R+ +V+E+D+ SK+
Sbjct: 505 SLNNLNILTVS-DSYMSLLKK--KALKAARMKTYRRRKTIEQNRKRKASVAEDDHQSKRR 561
Query: 494 NVSNTRKE 517
+S ++KE
Sbjct: 562 KLSKSKKE 569
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTFP 660
S +GKL+A+GG D V +W +P
Sbjct: 480 SPDGKLLASGGNDNVVNIWPYP 501
>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 253 TNLFPLCDSSNISNPFATPVFDAPPPPATMT 161
TNLF SS SN A P+ PPPP ++T
Sbjct: 394 TNLFGPTQSSASSNFDAVPLASRPPPPYSLT 424
>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
Length = 256
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTF 657
S +G L+A+GG+D VRVW F
Sbjct: 190 SPDGTLLASGGMDGAVRVWDF 210
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 135 TLQTLTNR-HVIVAGGGGASNTGVANG 212
T++ +T R H++ +GG GA NTG G
Sbjct: 2652 TVEKITGRGHILASGGKGAYNTGAGGG 2678
>SB_48670| Best HMM Match : AT_hook (HMM E-Value=3)
Length = 207
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +2
Query: 374 VNIRMVDAAEMRRGSFRAENGLVRRRRR-------TVSENDNISKKNNVSNTRKECHLKS 532
+ +R V R R NG V RR+R + N + K + NT++ +S
Sbjct: 93 IKLRRVPLKAPLRAPLRGRNGGVHRRKRGRPSGQGPAASNGPVVDKQGIPNTKEAKARES 152
Query: 533 DLVIVCRLTLV 565
D+ V LT+V
Sbjct: 153 DIHFVVTLTVV 163
>SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -2
Query: 599 LLILTTRCSGSLLKSVCTLS-QGLISNDILFLCY*H--CFSLIYYHFQRLSVSSASQAHS 429
++ LT + LLK+ T + G+ + CY + C S IY H + S S H
Sbjct: 4 IIALTDVHNRKLLKNHTTFNITGIDEENCSVKCYLNDFCQSTIYNHTSKTCHISTSTRHQ 63
Query: 428 QPGNFL 411
PG+F+
Sbjct: 64 HPGDFV 69
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVW 651
VR S NGK +A+GG D + +W
Sbjct: 32 VRWSGNGKYLASGGDDNLIMIW 53
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 598 NNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
+ G++M TGG D KV +W + ++ L T ++ + F
Sbjct: 29 STGRVMVTGGEDRKVNMWAVGQPNVIMSLAGHTSPVECVQF 69
>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
Length = 260
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 610 LMATGGIDTKVRVWTFPKMELLYVL 684
L+ATGG D + VWT +E +Y L
Sbjct: 79 LIATGGHDNVILVWTLDSVEPIYSL 103
>SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 592 ISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKP 693
I+ NG+++ + G D RVW + +VL+ P
Sbjct: 170 IACNGRVLVSAGSDNCARVWDIKEARCTHVLDTP 203
>SB_32323| Best HMM Match : WD40 (HMM E-Value=0)
Length = 611
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
++ R C ++ +D R + L +GG D K++VW + + L+ L
Sbjct: 36 WDYRMCTLLERFDEHDGPVRGINFHTVQPLFVSGGDDYKIKVWNYKQKRCLFTL 89
>SB_21478| Best HMM Match : Branch (HMM E-Value=0)
Length = 666
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 446 RRRRTVSENDNISKKNNVSNTRK 514
RRRR SE + KKNN NT K
Sbjct: 69 RRRRRSSERKRVEKKNNEYNTPK 91
>SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -1
Query: 558 VSLHTITRSDFK*HSFLVLLTLFF---FDILSFSETVRLLRLTSPFSARKLPRLISAAST 388
+ +T ++D H L+ + LF F SFS+ VR +++ S + P +
Sbjct: 155 IDQNTFLKADLALHPTLITIILFITLAFLFRSFSKQVRRKKISRGLSNERFPNKRQTENI 214
Query: 387 MRMFTL 370
R FT+
Sbjct: 215 ERQFTI 220
>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
Length = 584
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELL 675
S +GK + TGG D + VW+F ++ ++
Sbjct: 325 SPDGKYVVTGGEDDLITVWSFHELRVI 351
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,442,347
Number of Sequences: 59808
Number of extensions: 510480
Number of successful extensions: 1583
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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