BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1583 (720 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 33 0.18 SB_48919| Best HMM Match : Kelch_2 (HMM E-Value=0.91) 33 0.18 SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17) 31 0.71 SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15) 31 0.71 SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94 SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 30 1.6 SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) 30 2.2 SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 29 2.9 SB_48670| Best HMM Match : AT_hook (HMM E-Value=3) 29 3.8 SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8 SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8 SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0 SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) 29 5.0 SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0 SB_32323| Best HMM Match : WD40 (HMM E-Value=0) 28 6.6 SB_21478| Best HMM Match : Branch (HMM E-Value=0) 28 6.6 SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8 SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19) 28 8.8 >SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) Length = 1272 Score = 33.5 bits (73), Expect = 0.18 Identities = 13/51 (25%), Positives = 26/51 (50%) Frame = +1 Query: 547 VQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTK 699 V + + P R + + +G+L+ GG + VW+ LL++++ P K Sbjct: 95 VPPEDAKTPHYRTLAVPRDGRLLVAGGRSRFLHVWSLENKRLLHIIQLPAK 145 >SB_48919| Best HMM Match : Kelch_2 (HMM E-Value=0.91) Length = 198 Score = 33.5 bits (73), Expect = 0.18 Identities = 13/51 (25%), Positives = 26/51 (50%) Frame = +1 Query: 547 VQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTK 699 V + + P R + + +G+L+ GG + VW+ LL++++ P K Sbjct: 87 VPPEDAKTPHYRTLAVPRDGRLLVAGGRSRFLHVWSLENKRLLHIIQLPAK 137 >SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17) Length = 349 Score = 31.5 bits (68), Expect = 0.71 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = +2 Query: 314 SIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRGSFRAENGLVRRRRRTVSENDNISKKN 493 +++ +L AG+E +A+ R A L RRR+T EN N + N Sbjct: 8 TVEQGKFLVAGEEVERNEKMAERHKTEASATRIRKENANAALADRRRKT-RENCNNNHNN 66 Query: 494 NVSNTRKECHLKS 532 N +N +C++ + Sbjct: 67 NNNNISSDCNISN 79 >SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15) Length = 272 Score = 31.5 bits (68), Expect = 0.71 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = +1 Query: 544 SVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELD 708 S+ + N L R + +SNN KL A R+ K E +++LEK +ELD Sbjct: 124 SLPLEIGNLKLLRSLNVSNNPKLDALPASLAYCRLLEDKKQEQMWMLEKQMRELD 178 >SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 984 Score = 31.1 bits (67), Expect = 0.94 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +1 Query: 589 RISNNGKLMATGGIDTKVRVW 651 R S +G+L ATGG D KV+VW Sbjct: 959 RFSISGRLFATGGGDKKVKVW 979 >SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 599 Score = 30.7 bits (66), Expect = 1.2 Identities = 21/68 (30%), Positives = 37/68 (54%) Frame = +2 Query: 314 SIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRGSFRAENGLVRRRRRTVSENDNISKKN 493 S+ N LT +S+ L K + + AA M+ R R+R+ +V+E+D+ SK+ Sbjct: 505 SLNNLNILTVS-DSYMSLLKK--KALKAARMKTYRRRKTIEQNRKRKASVAEDDHQSKRR 561 Query: 494 NVSNTRKE 517 +S ++KE Sbjct: 562 KLSKSKKE 569 >SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) Length = 685 Score = 30.3 bits (65), Expect = 1.6 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 595 SNNGKLMATGGIDTKVRVWTFP 660 S +GKL+A+GG D V +W +P Sbjct: 480 SPDGKLLASGGNDNVVNIWPYP 501 >SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 956 Score = 30.3 bits (65), Expect = 1.6 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -3 Query: 253 TNLFPLCDSSNISNPFATPVFDAPPPPATMT 161 TNLF SS SN A P+ PPPP ++T Sbjct: 394 TNLFGPTQSSASSNFDAVPLASRPPPPYSLT 424 >SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) Length = 256 Score = 29.9 bits (64), Expect = 2.2 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +1 Query: 595 SNNGKLMATGGIDTKVRVWTF 657 S +G L+A+GG+D VRVW F Sbjct: 190 SPDGTLLASGGMDGAVRVWDF 210 >SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) Length = 3999 Score = 29.5 bits (63), Expect = 2.9 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +3 Query: 135 TLQTLTNR-HVIVAGGGGASNTGVANG 212 T++ +T R H++ +GG GA NTG G Sbjct: 2652 TVEKITGRGHILASGGKGAYNTGAGGG 2678 >SB_48670| Best HMM Match : AT_hook (HMM E-Value=3) Length = 207 Score = 29.1 bits (62), Expect = 3.8 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Frame = +2 Query: 374 VNIRMVDAAEMRRGSFRAENGLVRRRRR-------TVSENDNISKKNNVSNTRKECHLKS 532 + +R V R R NG V RR+R + N + K + NT++ +S Sbjct: 93 IKLRRVPLKAPLRAPLRGRNGGVHRRKRGRPSGQGPAASNGPVVDKQGIPNTKEAKARES 152 Query: 533 DLVIVCRLTLV 565 D+ V LT+V Sbjct: 153 DIHFVVTLTVV 163 >SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 226 Score = 29.1 bits (62), Expect = 3.8 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = -2 Query: 599 LLILTTRCSGSLLKSVCTLS-QGLISNDILFLCY*H--CFSLIYYHFQRLSVSSASQAHS 429 ++ LT + LLK+ T + G+ + CY + C S IY H + S S H Sbjct: 4 IIALTDVHNRKLLKNHTTFNITGIDEENCSVKCYLNDFCQSTIYNHTSKTCHISTSTRHQ 63 Query: 428 QPGNFL 411 PG+F+ Sbjct: 64 HPGDFV 69 >SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 622 Score = 29.1 bits (62), Expect = 3.8 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 586 VRISNNGKLMATGGIDTKVRVW 651 VR S NGK +A+GG D + +W Sbjct: 32 VRWSGNGKYLASGGDDNLIMIW 53 >SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 428 Score = 28.7 bits (61), Expect = 5.0 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +1 Query: 598 NNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720 + G++M TGG D KV +W + ++ L T ++ + F Sbjct: 29 STGRVMVTGGEDRKVNMWAVGQPNVIMSLAGHTSPVECVQF 69 >SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) Length = 260 Score = 28.7 bits (61), Expect = 5.0 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 610 LMATGGIDTKVRVWTFPKMELLYVL 684 L+ATGG D + VWT +E +Y L Sbjct: 79 LIATGGHDNVILVWTLDSVEPIYSL 103 >SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 420 Score = 28.7 bits (61), Expect = 5.0 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +1 Query: 592 ISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKP 693 I+ NG+++ + G D RVW + +VL+ P Sbjct: 170 IACNGRVLVSAGSDNCARVWDIKEARCTHVLDTP 203 >SB_32323| Best HMM Match : WD40 (HMM E-Value=0) Length = 611 Score = 28.3 bits (60), Expect = 6.6 Identities = 13/54 (24%), Positives = 25/54 (46%) Frame = +1 Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684 ++ R C ++ +D R + L +GG D K++VW + + L+ L Sbjct: 36 WDYRMCTLLERFDEHDGPVRGINFHTVQPLFVSGGDDYKIKVWNYKQKRCLFTL 89 >SB_21478| Best HMM Match : Branch (HMM E-Value=0) Length = 666 Score = 28.3 bits (60), Expect = 6.6 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +2 Query: 446 RRRRTVSENDNISKKNNVSNTRK 514 RRRR SE + KKNN NT K Sbjct: 69 RRRRRSSERKRVEKKNNEYNTPK 91 >SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 323 Score = 27.9 bits (59), Expect = 8.8 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Frame = -1 Query: 558 VSLHTITRSDFK*HSFLVLLTLFF---FDILSFSETVRLLRLTSPFSARKLPRLISAAST 388 + +T ++D H L+ + LF F SFS+ VR +++ S + P + Sbjct: 155 IDQNTFLKADLALHPTLITIILFITLAFLFRSFSKQVRRKKISRGLSNERFPNKRQTENI 214 Query: 387 MRMFTL 370 R FT+ Sbjct: 215 ERQFTI 220 >SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19) Length = 584 Score = 27.9 bits (59), Expect = 8.8 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELL 675 S +GK + TGG D + VW+F ++ ++ Sbjct: 325 SPDGKYVVTGGEDDLITVWSFHELRVI 351 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,442,347 Number of Sequences: 59808 Number of extensions: 510480 Number of successful extensions: 1583 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1435 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1576 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1913853903 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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