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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1583
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical pr...    34   0.089
AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.      34   0.089
AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical ...    32   0.47 
Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81490-1|CAB04014.1|  510|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z46242-3|CAA86338.2|  680|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z46242-2|CAA86335.2|  683|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF330595-1|AAK00353.1|  510|Caenorhabditis elegans SMU-1 protein.      31   1.1  
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p...    29   2.5  
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella...    29   2.5  
Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   4.4  
Z70754-9|CAA94777.2|   70|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC006713-1|AAK68407.2|  310|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z93379-8|CAC35812.2|  354|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical
           protein K02B12.3 protein.
          Length = 425

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +3

Query: 105 LLAKVDFPLYTLQTLTNRHVIVAGGGGASNTGVAN 209
           L+ +   P Y L+T+ +RH++VAGGGGAS TGV N
Sbjct: 14  LIGESGIPAYCLKTIGSRHILVAGGGGASKTGVLN 48



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
 Frame = +1

Query: 517 MSFEIRPCDSVQTDF-SNDPLQRVVRI--SNNGKLMATGGIDTKVRVW 651
           +SFEI+    V++DF +++  Q+ VR   S+ GK+ ATGG D  +R+W
Sbjct: 124 LSFEIQKVSQVRSDFHASNSYQKCVRFDKSSRGKIFATGGADGHIRIW 171


>Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical
           protein T03F6.5 protein.
          Length = 404

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
           R++RISN+G L A+  +D  V VW+F       VL
Sbjct: 237 RMIRISNDGTLFASASLDQTVTVWSFATKSAKLVL 271


>AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.
          Length = 404

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
           R++RISN+G L A+  +D  V VW+F       VL
Sbjct: 237 RMIRISNDGTLFASASLDQTVTVWSFATKSAKLVL 271


>AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical
           protein Y39H10A.6 protein.
          Length = 684

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLE-KPTKELD 708
           V+ S NGK+MA+GG    + +W   K +L  + E  P  E D
Sbjct: 261 VKFSRNGKMMASGGKSNSITLWKCAKSKLTRIGEMAPINEGD 302


>Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical
           protein Y53C12B.1 protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 583 VVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPT 696
           V+  +  G L+ATG  D  V+VW   + +  + L+ P+
Sbjct: 114 VMEFNEEGHLLATGSADHIVKVWNLTEQQCTHTLKGPS 151


>Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical
           protein F02H6.4 protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 696 SRLFQYVKEFHFWKGPNSDLGVDATCSHQ 610
           SR+ +Y K+FH  KGPN   G++   + Q
Sbjct: 305 SRIKEYQKQFHLRKGPNLQYGINKVLTAQ 333


>Z81490-1|CAB04014.1|  510|Caenorhabditis elegans Hypothetical
           protein CC4.3 protein.
          Length = 510

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 568 DPLQRVVRISNNGKLMATGGIDTKVRVW 651
           D   R +  S + +++ATG ID K++VW
Sbjct: 264 DAAVRCISFSRDSEMLATGSIDGKIKVW 291


>Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical
           protein F08G12.2 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 526 EIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
           ++R  + V+T ++N   Q  V  +++   + +GGID  ++VW   + E+ Y L
Sbjct: 152 DMRTKEPVKT-YTNRYQQTAVTFNDSSDQVISGGIDNVLKVWDMRRDEITYTL 203


>Z46242-3|CAA86338.2|  680|Caenorhabditis elegans Hypothetical
           protein F35G12.4b protein.
          Length = 680

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 508 KKRMSFEIRPCDSVQTDFSNDPLQRVVRI-SNNGKLMATGGIDTKVRVWTFP 660
           KK++SF IR     + ++SN      ++  + NG+L  TGG DT +R W+ P
Sbjct: 13  KKKISFIIRD----EHEYSNRSAVSALQYDAQNGRLF-TGGSDTIIRTWSVP 59


>Z46242-2|CAA86335.2|  683|Caenorhabditis elegans Hypothetical
           protein F35G12.4a protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 508 KKRMSFEIRPCDSVQTDFSNDPLQRVVRI-SNNGKLMATGGIDTKVRVWTFP 660
           KK++SF IR     + ++SN      ++  + NG+L  TGG DT +R W+ P
Sbjct: 13  KKKISFIIRD----EHEYSNRSAVSALQYDAQNGRLF-TGGSDTIIRTWSVP 59


>AF330595-1|AAK00353.1|  510|Caenorhabditis elegans SMU-1 protein.
          Length = 510

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 568 DPLQRVVRISNNGKLMATGGIDTKVRVW 651
           D   R +  S + +++ATG ID K++VW
Sbjct: 264 DAAVRCISFSRDSEMLATGSIDGKIKVW 291


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKE-LDDLDF 720
           R +  S NG  +ATG  D +V++W   K++ L       K+ ++ L F
Sbjct: 384 RSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQPINSLSF 431


>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 538 CDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELL 675
           C     D  N P+   V+ S NGK +    +D+ +++W F K + L
Sbjct: 247 CIKTLVDDENPPVA-FVKFSPNGKYILASNLDSTLKLWDFSKGKTL 291


>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
           protein F23B2.4 protein.
          Length = 1192

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVW 651
           F++     +QT   +  L   V  S+NG+L A+GG D  V +W
Sbjct: 45  FDVNEGGQMQTLKGHKDLVYTVAWSHNGELFASGGADKLVILW 87


>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
           transport protein protein.
          Length = 1192

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVW 651
           F++     +QT   +  L   V  S+NG+L A+GG D  V +W
Sbjct: 45  FDVNEGGQMQTLKGHKDLVYTVAWSHNGELFASGGADKLVILW 87


>Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical
           protein F28D1.1 protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKP 693
           + + + G  MAT G+D K R+W       L+    P
Sbjct: 338 IAVDDQGNYMATTGLDRKCRIWDVRMFRQLHAYSLP 373


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 544 SVQTDFSNDPLQRV--VRISNNGKLMATGGIDTKVRVW 651
           +V+ + +N+    +  ++ S  GKLMAT G D+ +RVW
Sbjct: 607 TVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVW 644


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 544 SVQTDFSNDPLQRV--VRISNNGKLMATGGIDTKVRVW 651
           +V+ + +N+    +  ++ S  GKLMAT G D+ +RVW
Sbjct: 607 TVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVW 644


>Z70754-9|CAA94777.2|   70|Caenorhabditis elegans Hypothetical
           protein F58E6.7 protein.
          Length = 70

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 373 LVQLTVALLSRCEVRPVLDAPYGTRHHDIR 284
           ++ L + L+S  E+RPV+ + Y   HH  R
Sbjct: 12  IILLFIFLISNVELRPVMKSGYSKNHHLFR 41


>AC006713-1|AAK68407.2|  310|Caenorhabditis elegans Hypothetical
           protein Y119D3A.4 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = +1

Query: 157 DMSLLLEEEEHRTQVSQMDLKYLNCHIM 240
           D+S++L+E+  R Q+ ++++ Y NC ++
Sbjct: 51  DLSVVLDEDSVRIQLDRIEIIYRNCSLL 78


>Z93379-8|CAC35812.2|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.11 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = -2

Query: 698 LVGFSST*RSSIFGKVQTLTLVSMPPVAI-NFPLLLILTTRCSGSLLKSVCTLSQGL-IS 525
           L+ F  T       K++ LT+   P      FP+L++L+ + +   +  +   S  L  +
Sbjct: 163 LLVFFKTPSDQEAAKLEALTIYPCPTREFFEFPVLIVLSDQKTAQFVTYIFIPSMFLQTA 222

Query: 524 NDILFLCY*HCFSLIYYHFQRLSVSSASQAHSQPGNFLV 408
            +ILF    H F  +YY +   S S +++      +FLV
Sbjct: 223 LNILF----HVFCTVYYLYIAPSKSVSTETQKNQKSFLV 257


>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical
           protein F55F8.3 protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 595 SNNGKLMATGGIDTKVRVW 651
           S +G LMATG  D KV++W
Sbjct: 369 SPDGSLMATGAEDGKVKIW 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,299,125
Number of Sequences: 27780
Number of extensions: 376716
Number of successful extensions: 1443
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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