BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1583 (720 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical pr... 46 2e-05 Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 34 0.089 AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 34 0.089 AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical ... 32 0.47 Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 31 1.1 Z82265-7|CAB05171.2| 425|Caenorhabditis elegans Hypothetical pr... 31 1.1 Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 31 1.1 Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical pr... 31 1.1 Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 31 1.1 Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 31 1.1 AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 31 1.1 U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 30 1.4 Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 30 1.9 Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 29 2.5 DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 29 2.5 Z70684-1|CAA94597.1| 580|Caenorhabditis elegans Hypothetical pr... 29 3.3 Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 4.4 AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 4.4 Z70754-9|CAA94777.2| 70|Caenorhabditis elegans Hypothetical pr... 28 5.8 AC006713-1|AAK68407.2| 310|Caenorhabditis elegans Hypothetical ... 28 5.8 Z93379-8|CAC35812.2| 354|Caenorhabditis elegans Hypothetical pr... 28 7.7 U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 28 7.7 >Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical protein K02B12.3 protein. Length = 425 Score = 46.4 bits (105), Expect = 2e-05 Identities = 19/35 (54%), Positives = 26/35 (74%) Frame = +3 Query: 105 LLAKVDFPLYTLQTLTNRHVIVAGGGGASNTGVAN 209 L+ + P Y L+T+ +RH++VAGGGGAS TGV N Sbjct: 14 LIGESGIPAYCLKTIGSRHILVAGGGGASKTGVLN 48 Score = 41.5 bits (93), Expect = 6e-04 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%) Frame = +1 Query: 517 MSFEIRPCDSVQTDF-SNDPLQRVVRI--SNNGKLMATGGIDTKVRVW 651 +SFEI+ V++DF +++ Q+ VR S+ GK+ ATGG D +R+W Sbjct: 124 LSFEIQKVSQVRSDFHASNSYQKCVRFDKSSRGKIFATGGADGHIRIW 171 >Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical protein T03F6.5 protein. Length = 404 Score = 34.3 bits (75), Expect = 0.089 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +1 Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684 R++RISN+G L A+ +D V VW+F VL Sbjct: 237 RMIRISNDGTLFASASLDQTVTVWSFATKSAKLVL 271 >AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. Length = 404 Score = 34.3 bits (75), Expect = 0.089 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +1 Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684 R++RISN+G L A+ +D V VW+F VL Sbjct: 237 RMIRISNDGTLFASASLDQTVTVWSFATKSAKLVL 271 >AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical protein Y39H10A.6 protein. Length = 684 Score = 31.9 bits (69), Expect = 0.47 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +1 Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLE-KPTKELD 708 V+ S NGK+MA+GG + +W K +L + E P E D Sbjct: 261 VKFSRNGKMMASGGKSNSITLWKCAKSKLTRIGEMAPINEGD 302 >Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical protein Y53C12B.1 protein. Length = 793 Score = 30.7 bits (66), Expect = 1.1 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +1 Query: 583 VVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPT 696 V+ + G L+ATG D V+VW + + + L+ P+ Sbjct: 114 VMEFNEEGHLLATGSADHIVKVWNLTEQQCTHTLKGPS 151 >Z82265-7|CAB05171.2| 425|Caenorhabditis elegans Hypothetical protein F02H6.4 protein. Length = 425 Score = 30.7 bits (66), Expect = 1.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 696 SRLFQYVKEFHFWKGPNSDLGVDATCSHQ 610 SR+ +Y K+FH KGPN G++ + Q Sbjct: 305 SRIKEYQKQFHLRKGPNLQYGINKVLTAQ 333 >Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical protein CC4.3 protein. Length = 510 Score = 30.7 bits (66), Expect = 1.1 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 568 DPLQRVVRISNNGKLMATGGIDTKVRVW 651 D R + S + +++ATG ID K++VW Sbjct: 264 DAAVRCISFSRDSEMLATGSIDGKIKVW 291 >Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical protein F08G12.2 protein. Length = 331 Score = 30.7 bits (66), Expect = 1.1 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = +1 Query: 526 EIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684 ++R + V+T ++N Q V +++ + +GGID ++VW + E+ Y L Sbjct: 152 DMRTKEPVKT-YTNRYQQTAVTFNDSSDQVISGGIDNVLKVWDMRRDEITYTL 203 >Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical protein F35G12.4b protein. Length = 680 Score = 30.7 bits (66), Expect = 1.1 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +1 Query: 508 KKRMSFEIRPCDSVQTDFSNDPLQRVVRI-SNNGKLMATGGIDTKVRVWTFP 660 KK++SF IR + ++SN ++ + NG+L TGG DT +R W+ P Sbjct: 13 KKKISFIIRD----EHEYSNRSAVSALQYDAQNGRLF-TGGSDTIIRTWSVP 59 >Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical protein F35G12.4a protein. Length = 683 Score = 30.7 bits (66), Expect = 1.1 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +1 Query: 508 KKRMSFEIRPCDSVQTDFSNDPLQRVVRI-SNNGKLMATGGIDTKVRVWTFP 660 KK++SF IR + ++SN ++ + NG+L TGG DT +R W+ P Sbjct: 13 KKKISFIIRD----EHEYSNRSAVSALQYDAQNGRLF-TGGSDTIIRTWSVP 59 >AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. Length = 510 Score = 30.7 bits (66), Expect = 1.1 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 568 DPLQRVVRISNNGKLMATGGIDTKVRVW 651 D R + S + +++ATG ID K++VW Sbjct: 264 DAAVRCISFSRDSEMLATGSIDGKIKVW 291 >U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical protein T10F2.4 protein. Length = 492 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKE-LDDLDF 720 R + S NG +ATG D +V++W K++ L K+ ++ L F Sbjct: 384 RSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQPINSLSF 431 >Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical protein C14B1.4 protein. Length = 376 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +1 Query: 538 CDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELL 675 C D N P+ V+ S NGK + +D+ +++W F K + L Sbjct: 247 CIKTLVDDENPPVA-FVKFSPNGKYILASNLDSTLKLWDFSKGKTL 291 >Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical protein F23B2.4 protein. Length = 1192 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +1 Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVW 651 F++ +QT + L V S+NG+L A+GG D V +W Sbjct: 45 FDVNEGGQMQTLKGHKDLVYTVAWSHNGELFASGGADKLVILW 87 >DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar transport protein protein. Length = 1192 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +1 Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVW 651 F++ +QT + L V S+NG+L A+GG D V +W Sbjct: 45 FDVNEGGQMQTLKGHKDLVYTVAWSHNGELFASGGADKLVILW 87 >Z70684-1|CAA94597.1| 580|Caenorhabditis elegans Hypothetical protein F28D1.1 protein. Length = 580 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = +1 Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKP 693 + + + G MAT G+D K R+W L+ P Sbjct: 338 IAVDDQGNYMATTGLDRKCRIWDVRMFRQLHAYSLP 373 >Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein R03E1.1 protein. Length = 1043 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = +1 Query: 544 SVQTDFSNDPLQRV--VRISNNGKLMATGGIDTKVRVW 651 +V+ + +N+ + ++ S GKLMAT G D+ +RVW Sbjct: 607 TVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVW 644 >AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. Length = 1043 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = +1 Query: 544 SVQTDFSNDPLQRV--VRISNNGKLMATGGIDTKVRVW 651 +V+ + +N+ + ++ S GKLMAT G D+ +RVW Sbjct: 607 TVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVW 644 >Z70754-9|CAA94777.2| 70|Caenorhabditis elegans Hypothetical protein F58E6.7 protein. Length = 70 Score = 28.3 bits (60), Expect = 5.8 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -3 Query: 373 LVQLTVALLSRCEVRPVLDAPYGTRHHDIR 284 ++ L + L+S E+RPV+ + Y HH R Sbjct: 12 IILLFIFLISNVELRPVMKSGYSKNHHLFR 41 >AC006713-1|AAK68407.2| 310|Caenorhabditis elegans Hypothetical protein Y119D3A.4 protein. Length = 310 Score = 28.3 bits (60), Expect = 5.8 Identities = 9/28 (32%), Positives = 21/28 (75%) Frame = +1 Query: 157 DMSLLLEEEEHRTQVSQMDLKYLNCHIM 240 D+S++L+E+ R Q+ ++++ Y NC ++ Sbjct: 51 DLSVVLDEDSVRIQLDRIEIIYRNCSLL 78 >Z93379-8|CAC35812.2| 354|Caenorhabditis elegans Hypothetical protein F21H7.11 protein. Length = 354 Score = 27.9 bits (59), Expect = 7.7 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Frame = -2 Query: 698 LVGFSST*RSSIFGKVQTLTLVSMPPVAI-NFPLLLILTTRCSGSLLKSVCTLSQGL-IS 525 L+ F T K++ LT+ P FP+L++L+ + + + + S L + Sbjct: 163 LLVFFKTPSDQEAAKLEALTIYPCPTREFFEFPVLIVLSDQKTAQFVTYIFIPSMFLQTA 222 Query: 524 NDILFLCY*HCFSLIYYHFQRLSVSSASQAHSQPGNFLV 408 +ILF H F +YY + S S +++ +FLV Sbjct: 223 LNILF----HVFCTVYYLYIAPSKSVSTETQKNQKSFLV 257 >U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical protein F55F8.3 protein. Length = 910 Score = 27.9 bits (59), Expect = 7.7 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +1 Query: 595 SNNGKLMATGGIDTKVRVW 651 S +G LMATG D KV++W Sbjct: 369 SPDGSLMATGAEDGKVKIW 387 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,299,125 Number of Sequences: 27780 Number of extensions: 376716 Number of successful extensions: 1443 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1336 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1442 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1687292480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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