Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1583
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 34 0.089
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 34 0.089
AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical ... 32 0.47
Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82265-7|CAB05171.2| 425|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 31 1.1
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 29 2.5
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 29 2.5
Z70684-1|CAA94597.1| 580|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 4.4
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 4.4
Z70754-9|CAA94777.2| 70|Caenorhabditis elegans Hypothetical pr... 28 5.8
AC006713-1|AAK68407.2| 310|Caenorhabditis elegans Hypothetical ... 28 5.8
Z93379-8|CAC35812.2| 354|Caenorhabditis elegans Hypothetical pr... 28 7.7
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical
protein K02B12.3 protein.
Length = 425
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3
Query: 105 LLAKVDFPLYTLQTLTNRHVIVAGGGGASNTGVAN 209
L+ + P Y L+T+ +RH++VAGGGGAS TGV N
Sbjct: 14 LIGESGIPAYCLKTIGSRHILVAGGGGASKTGVLN 48
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 517 MSFEIRPCDSVQTDF-SNDPLQRVVRI--SNNGKLMATGGIDTKVRVW 651
+SFEI+ V++DF +++ Q+ VR S+ GK+ ATGG D +R+W
Sbjct: 124 LSFEIQKVSQVRSDFHASNSYQKCVRFDKSSRGKIFATGGADGHIRIW 171
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.089
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
R++RISN+G L A+ +D V VW+F VL
Sbjct: 237 RMIRISNDGTLFASASLDQTVTVWSFATKSAKLVL 271
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.089
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
R++RISN+G L A+ +D V VW+F VL
Sbjct: 237 RMIRISNDGTLFASASLDQTVTVWSFATKSAKLVL 271
>AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical
protein Y39H10A.6 protein.
Length = 684
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLE-KPTKELD 708
V+ S NGK+MA+GG + +W K +L + E P E D
Sbjct: 261 VKFSRNGKMMASGGKSNSITLWKCAKSKLTRIGEMAPINEGD 302
>Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical
protein Y53C12B.1 protein.
Length = 793
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 583 VVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPT 696
V+ + G L+ATG D V+VW + + + L+ P+
Sbjct: 114 VMEFNEEGHLLATGSADHIVKVWNLTEQQCTHTLKGPS 151
>Z82265-7|CAB05171.2| 425|Caenorhabditis elegans Hypothetical
protein F02H6.4 protein.
Length = 425
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 696 SRLFQYVKEFHFWKGPNSDLGVDATCSHQ 610
SR+ +Y K+FH KGPN G++ + Q
Sbjct: 305 SRIKEYQKQFHLRKGPNLQYGINKVLTAQ 333
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 568 DPLQRVVRISNNGKLMATGGIDTKVRVW 651
D R + S + +++ATG ID K++VW
Sbjct: 264 DAAVRCISFSRDSEMLATGSIDGKIKVW 291
>Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical
protein F08G12.2 protein.
Length = 331
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 526 EIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
++R + V+T ++N Q V +++ + +GGID ++VW + E+ Y L
Sbjct: 152 DMRTKEPVKT-YTNRYQQTAVTFNDSSDQVISGGIDNVLKVWDMRRDEITYTL 203
>Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical
protein F35G12.4b protein.
Length = 680
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 508 KKRMSFEIRPCDSVQTDFSNDPLQRVVRI-SNNGKLMATGGIDTKVRVWTFP 660
KK++SF IR + ++SN ++ + NG+L TGG DT +R W+ P
Sbjct: 13 KKKISFIIRD----EHEYSNRSAVSALQYDAQNGRLF-TGGSDTIIRTWSVP 59
>Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical
protein F35G12.4a protein.
Length = 683
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 508 KKRMSFEIRPCDSVQTDFSNDPLQRVVRI-SNNGKLMATGGIDTKVRVWTFP 660
KK++SF IR + ++SN ++ + NG+L TGG DT +R W+ P
Sbjct: 13 KKKISFIIRD----EHEYSNRSAVSALQYDAQNGRLF-TGGSDTIIRTWSVP 59
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 568 DPLQRVVRISNNGKLMATGGIDTKVRVW 651
D R + S + +++ATG ID K++VW
Sbjct: 264 DAAVRCISFSRDSEMLATGSIDGKIKVW 291
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKE-LDDLDF 720
R + S NG +ATG D +V++W K++ L K+ ++ L F
Sbjct: 384 RSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQPINSLSF 431
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 538 CDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELL 675
C D N P+ V+ S NGK + +D+ +++W F K + L
Sbjct: 247 CIKTLVDDENPPVA-FVKFSPNGKYILASNLDSTLKLWDFSKGKTL 291
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVW 651
F++ +QT + L V S+NG+L A+GG D V +W
Sbjct: 45 FDVNEGGQMQTLKGHKDLVYTVAWSHNGELFASGGADKLVILW 87
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVW 651
F++ +QT + L V S+NG+L A+GG D V +W
Sbjct: 45 FDVNEGGQMQTLKGHKDLVYTVAWSHNGELFASGGADKLVILW 87
>Z70684-1|CAA94597.1| 580|Caenorhabditis elegans Hypothetical
protein F28D1.1 protein.
Length = 580
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKP 693
+ + + G MAT G+D K R+W L+ P
Sbjct: 338 IAVDDQGNYMATTGLDRKCRIWDVRMFRQLHAYSLP 373
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 544 SVQTDFSNDPLQRV--VRISNNGKLMATGGIDTKVRVW 651
+V+ + +N+ + ++ S GKLMAT G D+ +RVW
Sbjct: 607 TVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVW 644
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 544 SVQTDFSNDPLQRV--VRISNNGKLMATGGIDTKVRVW 651
+V+ + +N+ + ++ S GKLMAT G D+ +RVW
Sbjct: 607 TVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVW 644
>Z70754-9|CAA94777.2| 70|Caenorhabditis elegans Hypothetical
protein F58E6.7 protein.
Length = 70
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 373 LVQLTVALLSRCEVRPVLDAPYGTRHHDIR 284
++ L + L+S E+RPV+ + Y HH R
Sbjct: 12 IILLFIFLISNVELRPVMKSGYSKNHHLFR 41
>AC006713-1|AAK68407.2| 310|Caenorhabditis elegans Hypothetical
protein Y119D3A.4 protein.
Length = 310
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +1
Query: 157 DMSLLLEEEEHRTQVSQMDLKYLNCHIM 240
D+S++L+E+ R Q+ ++++ Y NC ++
Sbjct: 51 DLSVVLDEDSVRIQLDRIEIIYRNCSLL 78
>Z93379-8|CAC35812.2| 354|Caenorhabditis elegans Hypothetical
protein F21H7.11 protein.
Length = 354
Score = 27.9 bits (59), Expect = 7.7
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = -2
Query: 698 LVGFSST*RSSIFGKVQTLTLVSMPPVAI-NFPLLLILTTRCSGSLLKSVCTLSQGL-IS 525
L+ F T K++ LT+ P FP+L++L+ + + + + S L +
Sbjct: 163 LLVFFKTPSDQEAAKLEALTIYPCPTREFFEFPVLIVLSDQKTAQFVTYIFIPSMFLQTA 222
Query: 524 NDILFLCY*HCFSLIYYHFQRLSVSSASQAHSQPGNFLV 408
+ILF H F +YY + S S +++ +FLV
Sbjct: 223 LNILF----HVFCTVYYLYIAPSKSVSTETQKNQKSFLV 257
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVW 651
S +G LMATG D KV++W
Sbjct: 369 SPDGSLMATGAEDGKVKIW 387
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,299,125
Number of Sequences: 27780
Number of extensions: 376716
Number of successful extensions: 1443
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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