Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1583
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea... 36 0.027
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 32 0.33
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 32 0.33
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 31 0.58
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 31 0.58
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 31 0.58
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 31 0.77
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 31 0.77
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 31 1.0
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 31 1.0
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 31 1.0
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 30 1.8
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 30 1.8
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 30 1.8
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 30 1.8
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 30 1.8
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 30 1.8
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 29 2.3
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 29 3.1
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,... 29 3.1
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 29 3.1
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 29 4.1
At3g10140.1 68416.m01216 recA family protein contains Pfam profi... 29 4.1
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 29 4.1
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 29 4.1
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 29 4.1
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 29 4.1
At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B... 29 4.1
At5g65170.1 68418.m08197 VQ motif-containing protein contains PF... 28 5.4
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 28 5.4
At4g11745.1 68417.m01873 kelch repeat-containing protein similar... 28 5.4
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 28 5.4
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 28 5.4
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 28 5.4
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 28 5.4
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 28 5.4
At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C... 28 5.4
At1g22250.1 68414.m02781 expressed protein 28 5.4
At1g28520.1 68414.m03506 expressed protein 28 7.2
At1g13110.1 68414.m01520 cytochrome P450 71B7 (CYP71B7) identica... 28 7.2
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 27 9.5
At4g27620.2 68417.m03970 expressed protein 27 9.5
At4g27620.1 68417.m03969 expressed protein 27 9.5
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 27 9.5
At2g14240.1 68415.m01587 hypothetical protein and genefinder 27 9.5
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family... 27 9.5
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 27 9.5
At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (CYP71B... 27 9.5
>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
family protein similar to St12p protein (GI:166878)
{Arabidopsis thaliana}; contains Pfam profile: PF00400
WD domain, G-beta repeat
Length = 398
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 565 NDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
N LQ+ + S +G +A GG+D +R+ +P + ++ K K + D+DF
Sbjct: 121 NAGLQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDF 172
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 583 VVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
V+R + +G+ + +GG D V+VW +LL+ + ++ LDF
Sbjct: 241 VLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDF 286
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 604 GKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
G+ A+G +DT +++W K ++ + T+ ++ L F
Sbjct: 206 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRF 244
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKE 702
++IR +QT + +R + +G+ + +GG+D V+VW +LL+ +
Sbjct: 127 WDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKFHEGP 186
Query: 703 LDDLDF 720
+ LDF
Sbjct: 187 IRSLDF 192
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 505 HKKRMSFEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKME 669
H K S I P +T + + R R S +G ATGG DT ++++ PK++
Sbjct: 11 HAKGSSKTI-PKHESKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVK 64
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 505 HKKRMSFEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKME 669
H K S I P +T + + R R S +G ATGG DT ++++ PK++
Sbjct: 103 HAKGSSKTI-PKHESKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVK 156
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
V S NG +A+GG D + R+W +LLY++
Sbjct: 178 VDFSPNGYHLASGGEDNQCRIWDLRMRKLLYII 210
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 505 HKKRMSFEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVW 651
H K+ + E+ Q ++D ++ SN+GK +A+ G D VRVW
Sbjct: 200 HCKKQAKELSALYQSQDIKAHDGAILAMKFSNDGKFLASSGEDGIVRVW 248
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 538 CDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELL 675
C D N P+ VR S NGK + G +D +R+W + L
Sbjct: 189 CVKTLIDDENPPVS-FVRFSPNGKFILVGTLDNTLRLWNISSAKFL 233
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 583 VVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
V+R + +G+ + +GG D V+VW +LL + ++ LDF
Sbjct: 148 VLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDF 193
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 604 GKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
G+ A+G +DT +++W K ++ + T+ ++ L F
Sbjct: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRF 151
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 583 VVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
V+R + +G+ + +GG D V+VW +LL + ++ LDF
Sbjct: 148 VLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDF 193
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 604 GKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
G+ A+G +DT +++W K ++ + T+ ++ L F
Sbjct: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRF 151
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 592 ISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDD 711
+S++G+ +ATGG+D V +W E + V + ++ D
Sbjct: 214 VSSDGRYLATGGVDCHVHLWDIRTREHVQVNKLKNNQVKD 253
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 592 ISNNGKLMATGGIDTKVRVW 651
+S++G+ +ATGG+D V +W
Sbjct: 230 VSSDGRYLATGGVDRHVHIW 249
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDL 714
V+ SN+G L+A+ +D + +W+ L++ E + + DL
Sbjct: 49 VKFSNDGNLLASASVDKTMILWSATNYSLIHRYEGHSSGISDL 91
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 601 NGKLMATGGIDTKVRVWTFPKME 669
NG LMAT G + K+++W K E
Sbjct: 292 NGHLMATSGKERKIKIWDLRKFE 314
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
V S NG +A+GG D + R+W + LY++
Sbjct: 429 VNFSPNGYHLASGGEDNQCRIWDLRMRKSLYII 461
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
+ S +G+ + +GG+D V+VW +LL+ + + LDF
Sbjct: 97 IEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDF 141
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 529 IRPCDSVQTDFSNDPLQ----RVVRISNNGKLMATGGIDTKVRVWT 654
I C D S+ P++ R +R S +GKL + G D V++W+
Sbjct: 46 IENCPVSLVDESDGPIRKESIRAIRYSTSGKLFVSAGDDKLVKIWS 91
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 505 HKKRMSFEIRPCDSV-QTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVW 651
++++ F IRP + QT + V S +GK +A+G DT VR+W
Sbjct: 87 YQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLW 136
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 562 SNDPLQRVVRISNNGK--LMATGGIDTKVRVWTFPKMELLYVLEK 690
SN+ + V + NG+ L+ATG D + R+WT EL+ L K
Sbjct: 320 SNEKSKDVTTLDWNGEGTLLATGSCDGQARIWTL-NGELISTLSK 363
>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
Arabidopsis thaliana
Length = 1411
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 325 PDVPHSGTREPLSAVQGEHP-HGGCC*NETRKFPG*EWACEAEETDSL*K 471
P SGT + + G H G CC +T+K P W +A +L K
Sbjct: 167 PPPQTSGTPQGIDGAGGGHGGRGACCLTDTKKLPEDVWGGDAYSWSTLQK 216
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
R V N+ L +GG D K++VW + L+ L
Sbjct: 55 RGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTL 89
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 28.7 bits (61), Expect = 4.1
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELLYVLE 687
++NG L+ +G D ++ +W + +LL+ ++
Sbjct: 59 NSNGSLLISGSDDLRINIWNYSSRKLLHSID 89
>At3g10140.1 68416.m01216 recA family protein contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 389
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 382 DVHLVQLTVALLSRCEVRPVLDAPYGTRHHDIRTSLMAHHL 260
DV +V AL +CE LDAP G R+ D ++ +M L
Sbjct: 196 DVIVVDSVAALAPQCE----LDAPVGERYRDTQSRIMTQAL 232
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 523 FEIRPCDSVQTDFSNDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVLE 687
+++R ++QT F + V S+ + TGG+D V+VW K E LE
Sbjct: 166 WDMRQRGAIQT-FPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLE 219
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 580 RVVRISNNGKLMATGGIDTKVRVWTFPKMELLYVL 684
R V N+ L +GG D K++VW + L+ L
Sbjct: 55 RGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTL 89
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 505 HKKRMSFEIRPCDSVQTDFS-NDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKME 669
HKK+ C + +FS +D ++ S +GK +A+ G D VRVW+ + E
Sbjct: 198 HKKQFKELSSMC--IDQEFSAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEE 251
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 505 HKKRMSFEIRPCDSVQTDFS-NDPLQRVVRISNNGKLMATGGIDTKVRVWTFPKME 669
HKK+ C + +FS +D ++ S +GK +A+ G D VRVW+ + E
Sbjct: 198 HKKQFKELSSMC--IDQEFSAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEE 251
>At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B29)
strong similarity to gb|X97864 cytochrome P450 and
identical to Cytochrome P450 71B29
(SP:Q9SAE4)[Arabidopsis thaliana];PF|00067 Cytochrome
P450 family
Length = 490
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 357 WLSCPAVRYVRFWMLLTEHVITTLGPVSWRITSSEQTSSHYVTVQIFQI 211
W VR + + E + TTLG RIT + T+ HY + + +I
Sbjct: 311 WAITELVRNRKVMKKVQEEIRTTLGDKKERITEQDLTNLHYFKLVVKEI 359
>At5g65170.1 68418.m08197 VQ motif-containing protein contains
PF05678: VQ motif
Length = 362
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 322 LDAPYGTRHHDIRTSLMAHHLFR-TNLFPLCDSSNISNPFATPVFDAPPPPATM 164
L +P HH + S HH + NL ++ NISNPF P P+++
Sbjct: 209 LISPSTLNHHYLPPSSEYHHHHQHQNLLLNMNTPNISNPFLNNSLTDQPKPSSL 262
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 583 VVRISNNGKLMATGGIDTKVRVW 651
V++ S++GK +A+ G D VRVW
Sbjct: 262 VMKFSHDGKYLASAGEDCVVRVW 284
>At4g11745.1 68417.m01873 kelch repeat-containing protein similar to
SKP1 interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF01344: Kelch motif
Length = 284
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 127 GKSTLANNPSDL*GDILSYNINFHYFTHD 41
G L P + D++ + INFH+ HD
Sbjct: 132 GDKNLVYKPKEKTWDVVGFEINFHWIPHD 160
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
S +GKL+A+ G D KV +W +++ E+ + D+ F
Sbjct: 517 SYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRF 558
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
S +GKL+A+ G D KV +W +++ E+ + D+ F
Sbjct: 519 SYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRF 560
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
S +GKL+A+ G D KV +W +++ E+ + D+ F
Sbjct: 519 SYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRF 560
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
S +GKL+A+ G D KV +W +++ E+ + D+ F
Sbjct: 519 SYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRF 560
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 595 SNNGKLMATGGIDTKVRVWTFPKMELLYVLEKPTKELDDLDF 720
S +GKL+A+ G D KV +W +++ E+ + D+ F
Sbjct: 519 SYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRF 560
>At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase type 2C
GI:4336436 from [Lotus japonicus]
Length = 371
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 283 TSLMAHHLFRTNLFPLCDSSNISNPFATPVFDAP 182
+S + +LF + F C S N++NP P+ AP
Sbjct: 40 SSFIIFYLFLCSFFWFCQSPNLTNPSPPPLSVAP 73
>At1g22250.1 68414.m02781 expressed protein
Length = 200
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 467 ENDNISKKNNVSNTRKECHLKSDLVIVCRLTLVMIHCSVL 586
++DN K+ ++ +CH+ LV++C+ TLV +C +
Sbjct: 143 DDDNQKKQEMITTVCMKCHM---LVMLCKSTLVCPNCKFM 179
>At1g28520.1 68414.m03506 expressed protein
Length = 486
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 359 CQLYKVNIRMVDAAEMRRGSFRAEN--GLVRRRRRTVSENDNISKKNNVSNTRKEC 520
C LY++ +++VD + +G ++ L ++ R +E + N +N K C
Sbjct: 386 CALYRLELKLVDGKKTSKGKVSNDSVADLQKQMGRLTAEFPPENNTTNTTNNNKRC 441
>At1g13110.1 68414.m01520 cytochrome P450 71B7 (CYP71B7) identical
to (SP:Q96514) cytochrome P450 71B7 [Arabidopsis
thaliana]; PF|00067 Cytochrome P450 family. ESTs
gb|T44875, gb|T04814, gb|R65111, gb|T44310 and gb|T04541
come from this gene; identical to cDNA cytochrome P450
GI:1523795, ATCYP71B7
Length = 504
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -1
Query: 357 WLSCPAVRYVRFWMLLTEHVITTLGPVSWRITSSEQTSSHYVTVQIFQI 211
W +R R + + + TTLG RIT + + HY + + +I
Sbjct: 317 WAMAELIRNPRVMKKVQDEIRTTLGDKKQRITEQDLSQVHYFKLVVKEI 365
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 607 KLMATGGIDTKVRVW--TFPKMELLYVLEKPTKELD 708
+L G D +R+W T+P + L+Y+LE +D
Sbjct: 492 RLYMAGYQDGSMRIWDATYPCLSLIYILEPKASVID 527
>At4g27620.2 68417.m03970 expressed protein
Length = 325
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 407 SFQQHPPCGCSPCTADSGS 351
++ QH C SPC ++SGS
Sbjct: 149 AYHQHSTCSDSPCVSESGS 167
>At4g27620.1 68417.m03969 expressed protein
Length = 325
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 407 SFQQHPPCGCSPCTADSGS 351
++ QH C SPC ++SGS
Sbjct: 149 AYHQHSTCSDSPCVSESGS 167
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 604 GKLMATGGIDTKVRVWTFPKMELL 675
G ++ +GG+D +RVW PK + L
Sbjct: 377 GFMLYSGGLDKSLRVWWVPKQDNL 400
>At2g14240.1 68415.m01587 hypothetical protein and genefinder
Length = 128
Score = 27.5 bits (58), Expect = 9.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 152 KSTCHCCWRRR 184
+S+C CCWRRR
Sbjct: 24 RSSCGCCWRRR 34
>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
protein
Length = 635
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 458 SVSSASQAHSQPGNFLVSFQQHPPCGCSPCTADS-GSLVPL*GTSGSGCSLRNTSSRH*D 282
S SS Q S P +F + P P + + G L TSGSG S +TSS
Sbjct: 80 STSSPVQIFSSPFSFGSAHAAITPVSSGPAPSPTFGEPRILLATSGSGASATSTSSTS-S 138
Query: 281 QSHGASP 261
H +SP
Sbjct: 139 PLHSSSP 145
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 586 VRISNNGKLMATGGIDTKVRVW 651
++ S +GK +ATGG D V++W
Sbjct: 204 LKFSPDGKYLATGGEDGVVKIW 225
>At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (CYP71B28)
Identical to Cytochrome P450 (SP:Q9SAE3) [Arabidopsis
thaliana]; strong similarity to gb|X97864 cytochrome
P450 from Arabidopsis thaliana and is a member of the
PF|00067 Cytochrome P450 family. ESTs gb|N65665,
gb|T14112, gb|T76255, gb|T20906 and gb|AI100027 come
from this gene
Length = 490
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -1
Query: 357 WLSCPAVRYVRFWMLLTEHVITTLGPVSWRITSSEQTSSHYVTVQIFQI 211
W +R R + + + TTLG RIT + HY + + +I
Sbjct: 311 WAMTELIRNPRVMKKVQDEIRTTLGDKKERITEEDLNQLHYFKLMVKEI 359
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,297
Number of Sequences: 28952
Number of extensions: 350523
Number of successful extensions: 1432
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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