Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1577
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09820.2 68416.m01171 adenosine kinase 1 (ADK1) / adenosine 5...    29   3.7  
At3g09820.1 68416.m01170 adenosine kinase 1 (ADK1) / adenosine 5...    29   3.7  
At5g26270.1 68418.m03135 expressed protein  ; expression support...    28   6.4  
At4g39753.1 68417.m05629 kelch repeat-containing F-box family pr...    28   6.4  

>At3g09820.2 68416.m01171 adenosine kinase 1 (ADK1) / adenosine
           5'-phosphotransferase 1 identical to adenosine kinase 1
           /adenosine 5'-phosphotransferase 1 SP:Q9SF85 from
           [Arabidopsis thaliana]
          Length = 302

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 14  NWGAVENKTKKFYLFIYLLSTSKAILE*FRNIALLQANLWCDHMRNPFVSSFF 172
           NW  VE K K +Y+  + L+ S   ++  R  A     ++  ++  PF+  FF
Sbjct: 112 NWALVE-KAKFYYIAGFFLTVSPESIQLVREHAAANNKVFTMNLSAPFICEFF 163


>At3g09820.1 68416.m01170 adenosine kinase 1 (ADK1) / adenosine
           5'-phosphotransferase 1 identical to adenosine kinase 1
           /adenosine 5'-phosphotransferase 1 SP:Q9SF85 from
           [Arabidopsis thaliana]
          Length = 344

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 14  NWGAVENKTKKFYLFIYLLSTSKAILE*FRNIALLQANLWCDHMRNPFVSSFF 172
           NW  VE K K +Y+  + L+ S   ++  R  A     ++  ++  PF+  FF
Sbjct: 154 NWALVE-KAKFYYIAGFFLTVSPESIQLVREHAAANNKVFTMNLSAPFICEFF 205


>At5g26270.1 68418.m03135 expressed protein  ; expression supported
           by MPSS
          Length = 305

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 346 CSIYLFPVTIY*YIILISHGIFY-VFFRLV 432
           C I ++P+TI  + +L S  +FY VFF LV
Sbjct: 266 CCISIYPLTIVIWSVLASVVVFYVVFFMLV 295


>At4g39753.1 68417.m05629 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 390

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 219 RRCLCQNCFICVAITEKKEDTNGLRIWSHHKLAWSRAIFRNYSKIAF 79
           RR +C++ +IC A+    +  NG ++W   K+ WS  +    S   F
Sbjct: 339 RRRVCEDKYICCALISFNKRKNG-QVWG--KVEWSNVVLTVPSSYRF 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,133,725
Number of Sequences: 28952
Number of extensions: 218456
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)