Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1576
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.65 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    25   0.86 
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    24   1.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.5  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.6  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   4.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 719 SDGTLYSMISPNLRQILYNNNMV 651
           SDGT    + P LRQ+L N N+V
Sbjct: 60  SDGTAVGDV-PGLRQVLANGNLV 81


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 482 EGCLKFRMYQRTVKRVPSKSNRIKVLKNTVKFYTTVLEIVLLNN 613
           EG L+FR      +RVP      K  KN +K Y  V  + +++N
Sbjct: 321 EGQLEFRALLFVPRRVPFDLFENKKRKNNIKLY--VRRVFIMDN 362


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 476 CSEGCLKFRMYQRTVKRVPSKSNRIKVLKNTVKFYT 583
           CSE C  F+M Q      P +  +++ + N +K +T
Sbjct: 278 CSEYCRVFKMLQEEDIFTPDRIPQLEEMSNFLKRHT 313


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 602 LLNNIISNVFRMNLLFIPYYYYIVS 676
           LL  +  + F ++LLF+P  YY  S
Sbjct: 193 LLFLLCLDYFTLHLLFLPCIYYFYS 217


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 388 IDFHHKQSIANFTVSIALL 332
           I F HK+S  NF  ++A L
Sbjct: 100 ISFMHKKSFKNFVNNVAAL 118


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 612 LLSNTISSTVV*NLTVFFNTLIRFDFEGT 526
           L++ T+  T+V  +TV+    I+FD   T
Sbjct: 351 LINGTLLHTIVGAVTVYLIMFIQFDIATT 379


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 612 LLSNTISSTVV*NLTVFFNTLIRFDFEGT 526
           L++ T+  T+V  +TV+    I+FD   T
Sbjct: 176 LINGTLLHTIVGAVTVYLIMFIQFDIATT 204


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 330 LNRAIETVKLAIDCLWWKSICLSLTFCT 413
           LN+  E  K  + C+W K    SL   T
Sbjct: 367 LNKGAEQAKNVLKCVWCKQSFPSLAAMT 394


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,174
Number of Sequences: 336
Number of extensions: 3800
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)