BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1576 (753 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 31 0.18 SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.8 SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 26 5.0 SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 26 5.0 SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 26 5.0 SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 6.6 >SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces pombe|chr 1|||Manual Length = 860 Score = 31.1 bits (67), Expect = 0.18 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = +3 Query: 3 ESIRHANLSNIIGRGERLSTVSRIIYLSIFS 95 E+IR+ + N G+ + LS + +I+YL IFS Sbjct: 544 EAIRNIEILNSQGKDKELSNILKIVYLGIFS 574 >SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 3227 Score = 26.6 bits (56), Expect = 3.8 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -1 Query: 276 SHKSEDRIGTPVILTNNFIHTPEIDKI 196 ++ SE + P++L NN IHTP+ ++ Sbjct: 2071 NNASEGLLKHPLLLRNNLIHTPKATEL 2097 >SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 297 Score = 26.2 bits (55), Expect = 5.0 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +2 Query: 398 PNVLYSCCSRSNRSTA*NKHAHCASLCSEGC 490 P+ SCCS+ +S +K C S +GC Sbjct: 233 PSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263 >SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 526 Score = 26.2 bits (55), Expect = 5.0 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +2 Query: 482 EGCLKFRMYQRTVKRVPSKS--NRIKVLKNTVKFYTTVLEIVLLNNIISNVFRMNLLFIP 655 E CL+ +Y+ + S S + + +LK Y+ E++ L + NVF N + +P Sbjct: 463 EKCLEPWVYEWVSRHRGSISAEHGLGLLKKPFVGYSKSKEMIHLMKTLKNVFDPNGIMLP 522 Query: 656 YYY 664 Y Y Sbjct: 523 YKY 525 >SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 638 Score = 26.2 bits (55), Expect = 5.0 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +1 Query: 82 YRYFLSLPCTIVRVYTTAKLIFNIQTSDNYGLNRINFRNFI 204 Y Y LS + + T+A LI+ Y + I F NF+ Sbjct: 362 YGYLLSTDNSTGEILTSANLIYPEALEKGYSASLIEFSNFL 402 >SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 25.8 bits (54), Expect = 6.6 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = +2 Query: 533 SKSNRIKVLKNTVKFYTTVLEIVLLNNIISNVFRMNLLFIPYYYYIV 673 SK N + + K YT +L IV + + + + + PY Y+ V Sbjct: 157 SKLNSVPLNKKISYLYTFLLAIVSVLGFFTRITFLAFVIAPYIYFSV 203 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,037,919 Number of Sequences: 5004 Number of extensions: 63439 Number of successful extensions: 164 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 359287726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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