Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1576
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    31   0.18 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   5.0  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   5.0  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   5.0  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   6.6  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 3   ESIRHANLSNIIGRGERLSTVSRIIYLSIFS 95
           E+IR+  + N  G+ + LS + +I+YL IFS
Sbjct: 544 EAIRNIEILNSQGKDKELSNILKIVYLGIFS 574


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 276  SHKSEDRIGTPVILTNNFIHTPEIDKI 196
            ++ SE  +  P++L NN IHTP+  ++
Sbjct: 2071 NNASEGLLKHPLLLRNNLIHTPKATEL 2097


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 398 PNVLYSCCSRSNRSTA*NKHAHCASLCSEGC 490
           P+   SCCS+  +S   +K   C S   +GC
Sbjct: 233 PSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +2

Query: 482 EGCLKFRMYQRTVKRVPSKS--NRIKVLKNTVKFYTTVLEIVLLNNIISNVFRMNLLFIP 655
           E CL+  +Y+   +   S S  + + +LK     Y+   E++ L   + NVF  N + +P
Sbjct: 463 EKCLEPWVYEWVSRHRGSISAEHGLGLLKKPFVGYSKSKEMIHLMKTLKNVFDPNGIMLP 522

Query: 656 YYY 664
           Y Y
Sbjct: 523 YKY 525


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 82  YRYFLSLPCTIVRVYTTAKLIFNIQTSDNYGLNRINFRNFI 204
           Y Y LS   +   + T+A LI+       Y  + I F NF+
Sbjct: 362 YGYLLSTDNSTGEILTSANLIYPEALEKGYSASLIEFSNFL 402


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 533 SKSNRIKVLKNTVKFYTTVLEIVLLNNIISNVFRMNLLFIPYYYYIV 673
           SK N + + K     YT +L IV +    + +  +  +  PY Y+ V
Sbjct: 157 SKLNSVPLNKKISYLYTFLLAIVSVLGFFTRITFLAFVIAPYIYFSV 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,919
Number of Sequences: 5004
Number of extensions: 63439
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)