Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1576
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0160 - 13656172-13656476,13656799-13657528                       29   5.2  
05_01_0475 - 3818121-3820565                                           28   9.2  

>10_07_0160 - 13656172-13656476,13656799-13657528
          Length = 344

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 21  NLSNIIGRGERLSTVSRIIYLSIFSLVALHYCARLYNCQIDFQHTN 158
           ++S  I R  RL   +   + S+ S V +  C   Y+C   ++HTN
Sbjct: 75  SISPSICRSARLLCPNSTYFQSLSSTVFIDGCTFSYSCTFTYEHTN 120


>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 590 LEIVLLNNIISNVFRMNLLFIPYYYYIVSDANSEISLNTGSHPT--WLLIY 736
           + +  +NN     +   LL   YY Y++ D + +I +N  S  T  W  +Y
Sbjct: 250 INMTYVNNNEEEYYEYILLDESYYAYVLLDISGQIEINVWSQDTQSWKQVY 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,362,505
Number of Sequences: 37544
Number of extensions: 321570
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)