Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1576
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11708| Best HMM Match : Kunitz_BPTI (HMM E-Value=7.2)               35   0.082
SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)                    29   5.4  
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              28   7.1  
SB_1314| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_22673| Best HMM Match : FixQ (HMM E-Value=7.6)                      28   7.1  

>SB_11708| Best HMM Match : Kunitz_BPTI (HMM E-Value=7.2)
          Length = 156

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 375 WWKSICLSLTFCTRVALVRIDRRRKTNTLIAHRCVRKVALNFECTKE 515
           WW    +++T+C +  ++ +  RR  +TL++  C +K    + C KE
Sbjct: 69  WWYEKMVNITYCPKTKVLCLWYRRGEDTLLSKFCTKKCKALYFCIKE 115


>SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)
          Length = 550

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 7   RYVMPTFRISSVAVNVCRLCHELFIYRYFLSLPCTIVRV 123
           RYVM    +  VA+NV   CH   + RY +++ C +  V
Sbjct: 306 RYVMVMCHVFHVALNVTVTCHVFQVVRY-VTITCHVFHV 343


>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 444 RKTNTLIAHRCVRKVALNFECTKELSNVFLQNRIGLKY*KIPLNF 578
           RKT+TL  H+C+R  A  ++   + +NV L+  IG  Y  +P  F
Sbjct: 367 RKTHTLSPHKCLRPTA--WQQFTDFANV-LKAFIGTSYLALPFAF 408


>SB_1314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 566 TVKFYTTVLEIVLLNNIISNVF-RMNLLFIPYYYYIVSDANSEISLNTGSHPTWLLIYNI 742
           +V +    L  V+ N +I  VF +   L     Y++V  A +++ + T + P W+   N+
Sbjct: 32  SVVYILIALFAVIGNVLIIVVFSKKRRLRTRTNYFVVGLAAADVIVGTVTIPLWVTFVNL 91

Query: 743 IYN 751
           +YN
Sbjct: 92  LYN 94


>SB_22673| Best HMM Match : FixQ (HMM E-Value=7.6)
          Length = 184

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
 Frame = +2

Query: 524 RVPSKSNRIKVLKNT--VKFYTTVLEIVLLNNIISNVFRMNLLFIP---YYYYI 670
           R P++ +  ++ +NT   +  T V+ +  L+ +   VFR+ +++IP   YY+Y+
Sbjct: 35  RKPTRHDEARIKRNTRAKRILTPVVVVFGLSMLPVTVFRLVMVYIPSLVYYHYL 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,548,374
Number of Sequences: 59808
Number of extensions: 433355
Number of successful extensions: 1020
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)