Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1576
         (753 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC150311-1|AAI50312.1|  400|Homo sapiens TBC1 domain family, mem...    34   0.48 
BC132817-1|AAI32818.1|  400|Homo sapiens TBC1D13 protein protein.      33   1.1  
AL441992-10|CAI15411.1|  400|Homo sapiens TBC1 domain family, me...    33   1.1  
AB209565-1|BAD92802.1|  355|Homo sapiens TBC1 domain family, mem...    33   1.1  

>BC150311-1|AAI50312.1|  400|Homo sapiens TBC1 domain family, member
           13 protein.
          Length = 400

 Score = 34.3 bits (75), Expect = 0.48
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +2

Query: 527 VPSKSNRIKVLKNTVKFYTTVLEIVL-----LNNIISNVFRMNLLFIPYYYYIVSDANSE 691
           VPS  N  +VL N  + +  V+E +L     LN+ I+ V  MN +  P YY   +D NSE
Sbjct: 190 VPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNHGIAYVQGMNEIVGPLYYTFATDPNSE 249


>BC132817-1|AAI32818.1|  400|Homo sapiens TBC1D13 protein protein.
          Length = 400

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +2

Query: 527 VPSKSNRIKVLKNTVKFYTTVLEIVL-----LNNIISNVFRMNLLFIPYYYYIVSDANSE 691
           VPS  N  +VL N  + +  V+E +L     LN  I+ V  MN +  P YY   +D NSE
Sbjct: 190 VPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSE 249


>AL441992-10|CAI15411.1|  400|Homo sapiens TBC1 domain family,
           member 13 protein.
          Length = 400

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +2

Query: 527 VPSKSNRIKVLKNTVKFYTTVLEIVL-----LNNIISNVFRMNLLFIPYYYYIVSDANSE 691
           VPS  N  +VL N  + +  V+E +L     LN  I+ V  MN +  P YY   +D NSE
Sbjct: 190 VPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSE 249


>AB209565-1|BAD92802.1|  355|Homo sapiens TBC1 domain family, member
           13 variant protein.
          Length = 355

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +2

Query: 527 VPSKSNRIKVLKNTVKFYTTVLEIVL-----LNNIISNVFRMNLLFIPYYYYIVSDANSE 691
           VPS  N  +VL N  + +  V+E +L     LN  I+ V  MN +  P YY   +D NSE
Sbjct: 145 VPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSE 204


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,952,073
Number of Sequences: 237096
Number of extensions: 1755364
Number of successful extensions: 3385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3385
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)