Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1576
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical pr...    31   0.88 
AC024839-3|AAF60829.1|  308|Caenorhabditis elegans T box family ...    31   1.2  
AC024839-2|AAF60830.1|  308|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U39855-2|AAA81081.2|  355|Caenorhabditis elegans G protein, alph...    30   1.5  
AY008134-1|AAG32087.1|  355|Caenorhabditis elegans heterotrimeri...    30   1.5  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF047655-7|AAC04404.1|  561|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF024503-5|AAG24096.1|  330|Caenorhabditis elegans Serpentine re...    28   8.2  

>U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical
           protein M02D8.5 protein.
          Length = 669

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -2

Query: 752 SCKLYYKLTTMSDGTLYSMISPNLRQILYNNNMV*IINSFEIHSILYY*ATLSPVLS 582
           S K++Y LTT SD  +    S  + Q L+ N +V   ++ +I S+ Y  A  S +++
Sbjct: 476 SSKIFYGLTTSSDDCIAHNSSEPIAQDLFKNYLVLQYSTTDISSVSYSWAISSGIIA 532


>AC024839-3|AAF60829.1|  308|Caenorhabditis elegans T box family
           protein 30 protein.
          Length = 308

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = +2

Query: 353 KIGDRLFMVEIDLFIPNVLYSCCSRSNRSTA*NKHAHCASLCSEGCLKFRMYQRTVKRVP 532
           +I   +F +EI  F P  +Y   S     +  NKH+   +  SEG +K R       ++P
Sbjct: 150 EIASNIFKMEIAQFFPVSIYQQASMGRWKSDLNKHSTFGNR-SEGGIK-RKTSDAAGQLP 207

Query: 533 SKSNRIKVLKNTVKFYTTVLEIVLLNNIISNVFRMNLL-FIP 655
           SK +  K +K  V   + V   V  +  + N    NL  +IP
Sbjct: 208 SKRSSKKPVKKDVVDNSEVTLEVKTSQYLVNQNESNLTEYIP 249


>AC024839-2|AAF60830.1|  308|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.5 protein.
          Length = 308

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = +2

Query: 353 KIGDRLFMVEIDLFIPNVLYSCCSRSNRSTA*NKHAHCASLCSEGCLKFRMYQRTVKRVP 532
           +I   +F +EI  F P  +Y   S     +  NKH+   +  SEG +K R       ++P
Sbjct: 150 EIASNIFKMEIAQFFPVSIYQQASMGRWKSDLNKHSTFGNR-SEGGIK-RKTSDAAGQLP 207

Query: 533 SKSNRIKVLKNTVKFYTTVLEIVLLNNIISNVFRMNLL-FIP 655
           SK +  K +K  V   + V   V  +  + N    NL  +IP
Sbjct: 208 SKRSSKKPVKKDVVDNSEVTLEVKTSQYLVNQNESNLTEYIP 249


>Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical
           protein Y57G11C.7 protein.
          Length = 571

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 426 VRIDRRRKTNTLIAHRCVRKVALNFECTKELSNVFLQNRIGLK 554
           ++I R +  N    ++C +++ LNF+  K     FLQN + LK
Sbjct: 240 IKICRNKTKNNY--NKCFKRIQLNFQSEKSFLGHFLQNFLSLK 280


>U39855-2|AAA81081.2|  355|Caenorhabditis elegans G protein, alpha
           subunit protein 12 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 444 RKTNTLIAHRCVRKVALNFECTKELSNVFLQNRIGLKY*KIPLNFIRQYW 593
           R+TN ++  R V +  +N      +S +   N+  L   K+P + IRQY+
Sbjct: 239 RRTNRVVESRSVFETIVNNRAFSNVSIILFMNKNDLLQEKVPKSDIRQYF 288


>AY008134-1|AAG32087.1|  355|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 444 RKTNTLIAHRCVRKVALNFECTKELSNVFLQNRIGLKY*KIPLNFIRQYW 593
           R+TN ++  R V +  +N      +S +   N+  L   K+P + IRQY+
Sbjct: 239 RRTNRVVESRSVFETIVNNRAFSNVSIILFMNKNDLLQEKVPKSDIRQYF 288


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical protein
            F59A6.5 protein.
          Length = 1286

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = -1

Query: 240  ILTNNFIHTPEIDKISKIYSIQSVIITRLYVENQFGSCINAHNSARQREKISIDK*FVTQ 61
            I T+ F++    D I +I  I       +  E     C+NAH   RQ E + I       
Sbjct: 1193 IYTSPFLYIVHDDSI-EILEISETSDRTVLAERALFECVNAHVIGRQYEGVLISV-SSND 1250

Query: 60   STDVHR 43
            ST+VHR
Sbjct: 1251 STEVHR 1256


>Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical
           protein C06C6.6 protein.
          Length = 834

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 515 TVKRVPSKSNRIKVLKNTVKFYTTVLEIVLLNNIISNVFRMN 640
           T K VP K     VLKN +     +L+ V     ISNVF  N
Sbjct: 415 TCKPVPFKRKLATVLKNAIDHVILLLKQVKSLESISNVFNSN 456


>AF047655-7|AAC04404.1|  561|Caenorhabditis elegans Hypothetical
           protein C17B7.10 protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 578 YTTVLEIVLLNNIISNVFRMNLLFIPYYYYIVSDANS 688
           YT++ ++V ++N+      M +L + YY YI    NS
Sbjct: 144 YTSLEDLVNISNLTQWCIEMEVLSLGYYNYIADGLNS 180


>AF024503-5|AAG24096.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein246 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 195 KFYRFRVYE*SYLSKLLACRFGLPTYVINSF 287
           K+  F ++  S LS L  C FG+P++V+ SF
Sbjct: 51  KWLIFNLHFWSTLSDLTICFFGVPSFVLPSF 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,239
Number of Sequences: 27780
Number of extensions: 344893
Number of successful extensions: 933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)