Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1576
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    26   0.33 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   9.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 638 NLLFIPYYYYIVSDANSEISLNTGSHPTWLLIYNII 745
           N+L   YY+Y  S+    +     + PTWL    I+
Sbjct: 23  NVLDFDYYFYDYSNRTQALESIIANIPTWLSFIRIV 58


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 88  YFLSLPCTIVRVYTTAKLIFNIQTSDNYGLNRINFRNFIDFGCMNEVICQNYWR 249
           + LS P    R+ ++       Q   N G   I   +  D  C N  IC++ WR
Sbjct: 332 FMLSHPFGTPRIMSSFDFQSKDQGPPNDGNGNILSPSIHDNICSNGWICEHRWR 385


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 719 SDGTLYSMISPNLRQILYNNNMV 651
           +DG+    + P LRQ+L N N+V
Sbjct: 40  ADGSAVGDV-PGLRQVLPNGNLV 61


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 464 CASLCSEGCLKFRMYQRTVKRV 529
           C  +C+ GC+    Y R  K+V
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKV 84


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 464 CASLCSEGCLKFRMYQRTVKRV 529
           C  +C+ GC+    Y R  K+V
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKV 84


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 394 KQIDFHHKQSIANFTVSIALLR 329
           K + FH   SIA F+VS  +L+
Sbjct: 253 KILYFHAMSSIAEFSVSTEVLQ 274


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 293 CYPNFKCNFASKSQQSD 343
           CY + K +F  K +QSD
Sbjct: 17  CYYSLKRHFQDKHEQSD 33


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 297 IRILSAILHRNLNRAIETVKLAIDCLWWKSICLSLTFCTRVALVRIDRRRK 449
           + +    L   L+ AI  +K    C+  KSI  +L FC    +V  D + K
Sbjct: 136 MELCGTTLQNRLDEAI-LIKNERICIL-KSITCALQFCHNAGIVHADVKPK 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,285
Number of Sequences: 438
Number of extensions: 4664
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)