Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1575
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1158 + 26570239-26570319,26570942-26570956,26571674-26571772     30   2.3  
12_01_0442 + 3495333-3496484                                           30   2.3  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    28   7.1  
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095...    28   9.4  

>12_02_1158 + 26570239-26570319,26570942-26570956,26571674-26571772
          Length = 64

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 461 AHCTLYTKKKKMLHKNTLNYF*LRNILHVVRHDQNT 354
           A+ T Y+KKK  +H   L Y  LRN++ V+ H+  +
Sbjct: 24  AYTTAYSKKKSGVH-TFLRYTDLRNLIRVLMHESKS 58


>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 80  VTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPR----CSQGSVKDTPKYSE 244
           VTR  R   A     A A   PP +P+S KT+ + K  +P+    C      +TP++ E
Sbjct: 203 VTRPPRTKQAPPTAPAPAPPPPPPQPASPKTKTKAKAKKPKRKRSCVHCGSTETPQWRE 261


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 350 ILYFGHGVLRGVCFSIKNNLEYFYATFFFFSYIKCSVHGD 469
           +LYFG+ ++    F +      FYA F+F   I  SV  D
Sbjct: 620 VLYFGYMLIASAAFFVLTGTIGFYACFWFTRLIYSSVKID 659


>06_03_0508 -
           21607706-21608863,21608943-21609090,21609411-21609523,
           21609612-21609705,21609841-21609950,21610093-21610257,
           21611660-21611800
          Length = 642

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 350 ILYFGHGVLRGVCFSIKNNLEYFYATFFFFSYIKCSVHGD 469
           ILYFG+ ++    F +      FYA F+F   I  SV  D
Sbjct: 603 ILYFGYMLIISYAFFVLTGTIGFYACFWFVRKIYASVKID 642


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,455,604
Number of Sequences: 37544
Number of extensions: 389296
Number of successful extensions: 929
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)