BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1575 (768 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34 SB_38526| Best HMM Match : Gaa1 (HMM E-Value=0.51) 31 0.77 SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_28431| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5 SB_44679| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5 SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2 >SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1266 Score = 32.7 bits (71), Expect = 0.34 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +2 Query: 152 RPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNLKKAVIVQFSRVKDLSGQCCVVL 322 RPSS + +TK PR + + + TPK S+ +NL A Q R K ++ L Sbjct: 404 RPSSRRNPRETKTNTPRSRRSNSRKTPK-SKKSNLSTAASDQSERSKSIASHASTSL 459 >SB_38526| Best HMM Match : Gaa1 (HMM E-Value=0.51) Length = 189 Score = 31.5 bits (68), Expect = 0.77 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +2 Query: 371 VLRGVCFSIKNNLEYFYATFFFF 439 VL G+C S+ N LE F+ +FFF+ Sbjct: 67 VLEGICRSLNNLLERFHQSFFFY 89 >SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 295 Score = 29.5 bits (63), Expect = 3.1 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +2 Query: 8 TGRISRTKWTKES*LAALRDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKT-RVQT 184 T + SR + + S ++ +SP K+ + A +R+++ + PKR + K R+++ Sbjct: 48 TSQRSRARKRQSSSSSSTTSSSPERNIKKKSSKAPKRQSSSSSSSSPKRKTKKKQHRLKS 107 Query: 185 KLTRPRCSQGSVKDTPKYSEPN 250 TR + S S +P+ N Sbjct: 108 GNTRSQTSSSSAASSPERKSGN 129 >SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 302 Score = 29.1 bits (62), Expect = 4.1 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = +2 Query: 140 RPPK-RPSSAKTRVQTKLTRPRCSQGSVKD-TPKYS-EPNNLKKAVIVQFSRVKDL 298 RPP RP SAK R +++ RP SQ D P + +P L++ V FSR L Sbjct: 116 RPPSSRPQSAKGRPRSRSGRPMSSQSRGSDIIPDHEMQPKQLQQQ-CVSFSRYTPL 170 >SB_28431| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 97 Score = 29.1 bits (62), Expect = 4.1 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 519 FKDTIVFLNSTKRQCK*SPCTLHFIYEKKKNV 424 F D F T R C+ PC L FIY + N+ Sbjct: 27 FVDLRQFFGGTHRICQFQPCQLIFIYRRSLNL 58 >SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 746 Score = 28.7 bits (61), Expect = 5.5 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 116 RKTARAC*RPPKRPSSAKTRVQTKLT 193 R+ ARAC R PK PS++ T K T Sbjct: 541 RRDARACARAPKMPSASYTHQSRKAT 566 >SB_44679| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 180 Score = 28.7 bits (61), Expect = 5.5 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = +2 Query: 152 RPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNLKKAVIVQFSRVKDLSGQCC 313 +P +Q R + S + P+Y+ NN A+ Q+SR K S QCC Sbjct: 15 KPEKLPLHIQRATKRNKIFVISPRVKPRYT--NNRTTAICGQYSRSKRKSYQCC 66 >SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3293 Score = 28.3 bits (60), Expect = 7.2 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = +2 Query: 149 KRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNLKKAVIVQ 277 KRP A +R+QT L + +Q +VK +P P+ ++ I+Q Sbjct: 685 KRPQCATSRIQTPLVQ---NQSNVKSSPPDIGPSRIEDTNILQ 724 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,350,950 Number of Sequences: 59808 Number of extensions: 476863 Number of successful extensions: 989 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 932 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 989 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2083999566 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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