Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1575
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.5  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -1

Query: 228 VSFTDPCEHLGRVNFV--WTL 172
           ++F  PCEH G V+ +  W L
Sbjct: 109 ITFDIPCEHRGLVSIIDGWEL 129


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 579 GSHFEGYTNMSK 614
           G H +GYTN SK
Sbjct: 205 GFHMDGYTNNSK 216


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 192 VNFVWTLVFAEEGRFG 145
           +NF ++L  + +G+FG
Sbjct: 474 INFTYSLALSPDGQFG 489


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 740 DRRIHYLTSQNFLA*RSGNQAIITLLQKK 654
           DRR    T +N  + +SG+ AI+ L+  K
Sbjct: 380 DRRNGKTTEENPKSIKSGDAAIVMLVPSK 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,206
Number of Sequences: 438
Number of extensions: 4578
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)