Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1575
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /...    29   4.5  
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun...    29   4.5  
At5g36090.1 68418.m04349 hypothetical protein contains Pfam prof...    28   7.9  
At1g42250.1 68414.m04869 replication protein-related weak simila...    28   7.9  
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    28   7.9  
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    28   7.9  

>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 414

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -1

Query: 432 KNVA*KYSKLFLIEKHTPRSTP*PKYNIVILDYDLQNNTTQH*PERSFTREN*TITAFLR 253
           KN+    S L  ++ H  R  P  K  +  +  DL ++      ++S  R N  +++  R
Sbjct: 341 KNIRGTSSSLVAVQLHCSRGMPCKKVYLENVHLDLSSSDGGR--KQSSNRGNEAVSSSCR 398

Query: 252 LLGSEYLGVSFTDPC 208
            + + Y+G     PC
Sbjct: 399 NVRANYIGTQIPPPC 413


>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 415

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 692 SGNQAIITLLQKKNCGWTYWTIRKHSLGHIS--IALKM*TQRIRIT*SHVLGY 540
           S N   +T+L  K C WT   I K     +S  +AL+   +R+ +  +  LG+
Sbjct: 322 SSNHGTVTILSNKTCTWTIGRIPKDKTPCLSGTLALEPGLERLHVFPTFKLGF 374


>At5g36090.1 68418.m04349 hypothetical protein contains Pfam profile
           PF03778: Protein of unknown function (DUF321)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 711 ELFGLKVW*PSHYYTFAKKKLRLDILDNK 625
           ++ GL+ W  +H +TF  +KLR   L  K
Sbjct: 53  KITGLRFWRENHGFTFLARKLRFTFLTGK 81


>At1g42250.1 68414.m04869 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 114

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 591 QNVNPENSYHLISRIRLHTIQH 526
           ++V+P++ YH I  +  HTI+H
Sbjct: 2   EHVSPKSRYHFIECVDFHTIKH 23


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 62  RDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPK 235
           R  SP   RS  Y  A R  + R    PP+R S    R     +R    +GS +D+P+
Sbjct: 114 RSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPR 171


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 62  RDTSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPK 235
           R  SP   RS  Y  A R  + R    PP+R S    R     +R    +GS +D+P+
Sbjct: 114 RSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPR 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,851
Number of Sequences: 28952
Number of extensions: 327722
Number of successful extensions: 672
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)