Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1574
         (773 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54Q06 Cluster: Putative uncharacterized protein; n=1; ...    36   0.85 
UniRef50_Q54LS5 Cluster: Putative uncharacterized protein; n=5; ...    35   2.0  
UniRef50_UPI0000498AAF Cluster: hypothetical protein 21.t00019; ...    34   4.5  

>UniRef50_Q54Q06 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 222

 Score = 36.3 bits (80), Expect = 0.85
 Identities = 24/82 (29%), Positives = 37/82 (45%)
 Frame = -2

Query: 277 NFFC*S*TNYAVLISAFKWLLNSIHKFYENRGKNVIAFFLWTFKKISHNHLCYSVFNFGR 98
           NFF  +   +  LI  F  ++    + Y+  G NVI   +  F  I       S  N+ +
Sbjct: 117 NFFGITIQEFLTLIQIFPTIIKDDIRLYDACGANVIVMKIGKFAHIIRTEGLQSFANYAK 176

Query: 97  YLNYSR*FKIIYVTQFLLRSIL 32
              YS  F +I VT+ LL S++
Sbjct: 177 NALYSNPFYLIPVTRGLLESLV 198


>UniRef50_Q54LS5 Cluster: Putative uncharacterized protein; n=5;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1693

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -1

Query: 368  PTLFFSVILILNLLFSLYTVLIN*FKTSK 282
            P LFFS+ILIL L+F +Y +L N  K +K
Sbjct: 1661 PVLFFSIILILILIFFIYNILSNKSKQNK 1689


>UniRef50_UPI0000498AAF Cluster: hypothetical protein 21.t00019;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 21.t00019 - Entamoeba histolytica HM-1:IMSS
          Length = 722

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = -2

Query: 337 LIYCFHCIQY**INLKHQSQNFFC*S*TNYAVL-----ISAFKWLLNSIHKFYENRGKNV 173
           ++Y F C+ +  I+  +Q Q +F      YAVL     I  F WL N      ++ G+ +
Sbjct: 36  VLYIFICLMFL-ISTVYQLQIWF------YAVLMIYNSILLFSWLYNYFVFALDDIGRVI 88

Query: 172 IAFFLWTFKKISHNHLCY 119
           + F+ W  K +SHN + Y
Sbjct: 89  VRFYKWKNKYLSHNDIKY 106


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,302,752
Number of Sequences: 1657284
Number of extensions: 11654703
Number of successful extensions: 21141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21137
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)