Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1574
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    31   1.0  
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    29   5.4  

>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = -2

Query: 238 ISAFKWLLNSIHKFYENRGKNVIAF---FLWTFK-KISHNHLCYSVFNFGRYLNYSR*FK 71
           +S+ +WL ++IH FY +   ++I+F     W+ K  +  N L +S++N      Y   F 
Sbjct: 475 LSSIEWLTSTIHTFYRDVHAHLISFLSDLKWSCKIDLVSNMLNFSMWNSLHVAKYMDKFT 534

Query: 70  IIYV 59
           +I V
Sbjct: 535 LIVV 538


>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 610 CFAESTTGSESRPT*KIRQETQWAMSG*SYRTLSLFDED 726
           C  E T GSE  PT  +   TQ  +      TLS F+ED
Sbjct: 676 CSTEKTNGSEITPTTGVIPLTQENIDTVKLNTLSCFEED 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,181
Number of Sequences: 37544
Number of extensions: 277224
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)