Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1574
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z46266-9|CAO78710.1|  790|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 208 YYLKAI*TLKSIRRNWFNFNKRSFGFDVLN*FISTVYNENN 330
           + LKA+ TL+   +N  N +K S    VLN F+ TV ++ +
Sbjct: 20  HQLKALQTLQKYVKNIENISKESINRSVLNNFLETVVHQKS 60


>Z46266-9|CAO78710.1|  790|Caenorhabditis elegans Hypothetical
           protein ZK899.8j protein.
          Length = 790

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 190 NRGKNVIAFFLWTFKKISHNHLCYSVFNFGRYLNYS 83
           N+ KNV+  F+W+F K+  N++  S   FG Y  Y+
Sbjct: 41  NKIKNVLKNFIWSF-KLKKNYVRVSSL-FGEYCRYT 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,769
Number of Sequences: 27780
Number of extensions: 282012
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)