Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1573
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0028 + 15659824-15661266                                         29   4.7  
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009...    28   8.1  

>06_03_0028 + 15659824-15661266
          Length = 480

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 663 YVVFLLNSLSPDDWEKGRRMMM 598
           Y+ + + +L PDDW+ G+R+M+
Sbjct: 210 YMSYDVGALCPDDWDLGQRLML 231


>03_06_0198 -
           32299480-32299643,32300084-32300126,32300843-32300929,
           32301063-32301098,32301187-32301295,32301408-32301499,
           32302029-32302115,32303887-32304222
          Length = 317

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/69 (31%), Positives = 36/69 (52%)
 Frame = -2

Query: 499 ERDSAFSFH*NRYILHSLV*AG*GSHQQTSFNRENKS*RQGNKIAFTLISYLLMHYREHS 320
           E D  F+FH   YIL  ++ A  G  Q++S  ++N +     +++ +LI+   M + E  
Sbjct: 211 ELDLIFNFHKAYYILDEILIA--GELQESS--KKNVARLIAAQLSTSLIALYYMQHLESG 266

Query: 319 VFGMRFYAL 293
            FG R  AL
Sbjct: 267 NFGQRCLAL 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,761
Number of Sequences: 37544
Number of extensions: 271488
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)