Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1572
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect...    29   4.3  
U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect...    29   4.3  
U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.        29   4.3  
Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical
           protein C31C9.8 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 29  NKENYFLLKNVNDKQNI 79
           N ENYFLLKNV + Q+I
Sbjct: 221 NHENYFLLKNVREVQHI 237


>U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform b protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 23  GFNKENYFLLKNVNDKQNILFFAYYIICRR 112
           G  ++N FL++NV DKQ  L F    +CRR
Sbjct: 101 GLPEDNKFLVRNVFDKQ--LLFGKKYVCRR 128


>U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform a protein.
          Length = 754

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 23  GFNKENYFLLKNVNDKQNILFFAYYIICRR 112
           G  ++N FL++NV DKQ  L F    +CRR
Sbjct: 101 GLPEDNKFLVRNVFDKQ--LLFGKKYVCRR 128


>U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.
          Length = 754

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 23  GFNKENYFLLKNVNDKQNILFFAYYIICRR 112
           G  ++N FL++NV DKQ  L F    +CRR
Sbjct: 101 GLPEDNKFLVRNVFDKQ--LLFGKKYVCRR 128


>Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical
           protein T23D5.11 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 539 CISRYKRKNKSKSVKIMMLKLKIDN 465
           C+S Y R  KSK+  ++++KLK  N
Sbjct: 290 CVSEYGRALKSKNCNLIVIKLKGSN 314


>Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical
           protein R05D7.5 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 235 CTLPKRGVNIHIYRKMPCTFAAIST---FTVTYIS 330
           C LP   VN HIY  +P +F+ + T   F VT IS
Sbjct: 23  CLLPASFVNRHIYVCIPNSFSPLPTGCFFVVTEIS 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,854,251
Number of Sequences: 27780
Number of extensions: 269126
Number of successful extensions: 615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)