Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1572
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27440.1 68418.m03275 expressed protein                             30   1.3  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    29   2.3  

>At5g27440.1 68418.m03275 expressed protein 
          Length = 216

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 595 KKNLVHVNEVKLLFLCVVLWFSSFCDIFNIYI 690
           KKN V +    L+F+CV+LW   FC I  I I
Sbjct: 116 KKNKVPI----LVFVCVILWIYGFCKISGIEI 143


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
           similar to SP|O35134 DNA-directed RNA polymerase I
           largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
           subunit) (RPA194) {Mus musculus}; contains InterPro
           accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 116 LTYDILYNMQRKVCFVCHLHFLIK 45
           L +++L+N  ++ CF CH HF+ K
Sbjct: 106 LLFNLLFNFLQRACFFCH-HFMAK 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,466,096
Number of Sequences: 28952
Number of extensions: 229969
Number of successful extensions: 433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)