Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1567X
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    29   0.34 
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   2.4  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   3.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   4.2  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   4.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    24   9.7  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -3

Query: 254 FLYQFQSINKLKSLSLNKTIA*KGKRKYFLKNNFLSNTRLNQRHFRKFDRYSLGCTIFDL 75
           +L   +SIN+  SLS+ K+ +   ++   L N  +  +R++   F K D  S      D+
Sbjct: 284 YLRDRRSINRQSSLSIPKSTSETTRKTLALSNGGIDQSRVSSDSF-KVDDSSAKMAAIDI 342

Query: 74  W 72
           W
Sbjct: 343 W 343


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 15/71 (21%), Positives = 32/71 (45%)
 Frame = -3

Query: 344 IFFAIPAYNIYQFLILKDKQGRMA*SARLIFLYQFQSINKLKSLSLNKTIA*KGKRKYFL 165
           IF++     ++        +  +A +  ++ +  FQS+ KLK L+ + ++    K     
Sbjct: 418 IFYSFFVKTLHAISSSSAAESSIALALHMLVINAFQSMEKLKILTFDDSLQEIYKEAQIQ 477

Query: 164 KNNFLSNTRLN 132
              F+SN  L+
Sbjct: 478 SGTFMSNATLS 488


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 142 VFERKLFFKKYFRLPFYAIVLFRLNDFSLFIDWN*YKNIRRA 267
           +F+  LF  K FR+  Y + +F L  F   I W   K + RA
Sbjct: 67  LFQHPLF-SKLFRISLYILGVFSLYMFRWAIAWFCEKRLSRA 107


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 314  YQFLILKDKQGRMA*SARLIFLYQFQSINKLKSLSLN 204
            +QF+++  K    + S  L+ +Y+ Q  N  ++LS+N
Sbjct: 1186 FQFVVISLKNQLFSKSEALVGIYRDQQENSSRTLSIN 1222


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 190 YAIVLFRLNDFSLFIDW 240
           YA  LFR  DFS  +DW
Sbjct: 396 YASFLFRRGDFSASMDW 412


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 263 RLIFLYQFQSINKLKSLS 210
           RLI  Y F+S+++LK+L+
Sbjct: 532 RLILHYSFESVHQLKTLT 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,876
Number of Sequences: 5004
Number of extensions: 27845
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)