Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1567X
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432...    28   2.3  
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    27   7.1  
01_06_0671 - 31076463-31076610,31077060-31077202,31077758-310779...    27   7.1  

>05_06_0119 +
           25742277-25742434,25742976-25743061,25743146-25743223,
           25743919-25744031,25744094-25744171,25744941-25744949,
           25744981-25745082,25745165-25745714,25745941-25746146,
           25746868-25747031,25747157-25747310
          Length = 565

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 233 INKLKSLSLNKTIA*KGKRKYFL-KNNFLSNTRLNQRH-FRKFDRYSLGCTIFDLWREL 63
           +  L+SLS   T   K +R+Y L K +F +      R  ++ +D Y+L     DLWR++
Sbjct: 339 LTSLRSLSSAGTRDTKEQRQYILPKQHFQAPLSFWPRWAYQMYDSYALARRAADLWRQI 397


>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
            42543601-42543744,42543840-42544013,42544056-42544369,
            42544467-42544636,42544916-42545043,42545125-42545185,
            42545473-42545642,42545783-42547387,42547479-42547631,
            42547747-42547905,42548066-42548236,42548357-42548404,
            42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 188  KGKRKYFLKN-NFLSNTRLNQRHFRKFDRYSLGCTIFDLWRELTKN 54
            KG  +  LK   F+S+T L  +H     ++ + C  F L   +TKN
Sbjct: 937  KGSMREILKTVTFISSTSLCDQHTDDDKKFQVSCLQFFLPGSITKN 982


>01_06_0671 -
           31076463-31076610,31077060-31077202,31077758-31077963,
           31078119-31078644,31078753-31078854,31079572-31079637,
           31079710-31079822,31080260-31080345,31081007-31081146
          Length = 509

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 122 FRKFDRYSLGCTIFDLWRELTKN 54
           +  +D YSL   + DLWR++  N
Sbjct: 331 YEMYDSYSLARRVADLWRQIVVN 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,679
Number of Sequences: 37544
Number of extensions: 136636
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)