BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1567X (394 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z93380-7|CAB07603.2| 335|Caenorhabditis elegans Hypothetical pr... 29 0.90 Z82053-11|CAB04839.2| 335|Caenorhabditis elegans Hypothetical p... 29 0.90 >Z93380-7|CAB07603.2| 335|Caenorhabditis elegans Hypothetical protein T26E3.9 protein. Length = 335 Score = 29.5 bits (63), Expect = 0.90 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -3 Query: 254 FLYQFQSINKLKSLSLNKTIA*KGKRKYFLKNNFLSNTRLNQRHFRKFDRYSLG 93 +L + S + SL+ ++ I+ R YF + NF+SNT L + F Y +G Sbjct: 113 YLTNYFSTYSVFSLTFDRLISHYNPRFYFSQQNFVSNTLLIIQCLLSFGTYYVG 166 >Z82053-11|CAB04839.2| 335|Caenorhabditis elegans Hypothetical protein T26E3.9 protein. Length = 335 Score = 29.5 bits (63), Expect = 0.90 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -3 Query: 254 FLYQFQSINKLKSLSLNKTIA*KGKRKYFLKNNFLSNTRLNQRHFRKFDRYSLG 93 +L + S + SL+ ++ I+ R YF + NF+SNT L + F Y +G Sbjct: 113 YLTNYFSTYSVFSLTFDRLISHYNPRFYFSQQNFVSNTLLIIQCLLSFGTYYVG 166 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,942,934 Number of Sequences: 27780 Number of extensions: 142653 Number of successful extensions: 217 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 217 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 598330768 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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