Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1567X
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   2.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   5.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    20   8.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   8.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   8.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 224 LKSLSLNKTIA*KGKRKYFLKNNFLSNTRLNQRH 123
           + SLS NKTI      KY   NN  +N   N  +
Sbjct: 315 ISSLS-NKTIHNNNNYKYNYNNNNYNNNNYNNNY 347


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 61 RRMKDRSCDLC*ASYLSLNS 2
          R  K+  C++C   Y SLNS
Sbjct: 28 RPSKEPICNICKRVYSSLNS 47


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -3

Query: 182 KRKYFLKNNFLSNTRLNQRHFRKFDRYSLGCTIFDLWRELTKNER 48
           +++Y        N+  N+R +RK+   S G +     RE +K  +
Sbjct: 258 RKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETK 302


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -3

Query: 182 KRKYFLKNNFLSNTRLNQRHFRKFDRYSLGCTIFDLWRELTKNER 48
           +++Y        N+  N+R +RK+   S G +     RE +K  +
Sbjct: 269 RKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETK 313


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 137 LNQRHFRKFDRYSLGCTIFDL 75
           LN+ H    D +SLG  +F+L
Sbjct: 538 LNKGHDISADYWSLGVLMFEL 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,058
Number of Sequences: 438
Number of extensions: 1982
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)