Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1564
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.7  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   4.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   6.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +1

Query: 442 ATPETQQSRCVPRTIFKTNFKRTRHRVHVPPR 537
           A+P   QS   P   F        H  H PPR
Sbjct: 716 ASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPR 747


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +1

Query: 442 ATPETQQSRCVPRTIFKTNFKRTRHRVHVPPR 537
           A+P   QS   P   F        H  H PPR
Sbjct: 608 ASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPR 639


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 428 VRGHQQRQKHNKAAAYRALFSKLILRGHAIEFTYHREERLIP 553
           V GH   Q    AAAYR+    L +  +A    +H   +  P
Sbjct: 21  VAGHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHHHLQARP 62


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 595 ITTAPLVPPRPPTLWDEP 542
           I   P  PPR PT++ +P
Sbjct: 133 IREKPYTPPRLPTVYGKP 150


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 607 HPLRITTAPLVPPRPPTLWDE 545
           +PL   T+ L+P RPP   +E
Sbjct: 353 NPLDAVTSGLLPVRPPLTREE 373


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,474
Number of Sequences: 336
Number of extensions: 3147
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)