Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1564
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    28   1.7  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   6.8  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.0  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   9.0  

>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 386 FSSLLLTGNEFT-TVVRGHQQRQKHNKAAAYRALFSKLILRG 508
           + S L T   F  T  R     +K + AAAY+ALF KL L G
Sbjct: 258 YLSYLWTSGPFRDTYTRFGYDPRKDSNAAAYQALFFKLKLNG 299


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 398 TTKKSEFSHGTRGTQGVLIPSVTNDTNEIVSDS 300
           TT + + +H T    G+L+ S   D    V DS
Sbjct: 485 TTTQKDINHATISNSGILVTSSGTDNQTFVWDS 517


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 416 TRFPSTTTKKSEFSHGTRGTQ-GVLIPSVTNDTNEIVSDSMTNIEN 282
           T FPS+ T    F HG+ G      +PS +   N    D  ++  N
Sbjct: 297 TLFPSSATNSFSFEHGSAGFPIPGSVPSTSYHANTASEDGFSSSYN 342


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 598 RITTAPLVPPRPPTLWDEPLLSV 530
           RI ++P+V P P T + EPL  +
Sbjct: 488 RIQSSPIVAPTPDTSFREPLSEI 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,868
Number of Sequences: 5004
Number of extensions: 53773
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)