BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1564 (769 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 28 1.7 SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 26 6.8 SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.0 SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 25 9.0 >SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box associated subunit Sfc1|Schizosaccharomyces pombe|chr 1|||Manual Length = 456 Score = 27.9 bits (59), Expect = 1.7 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +2 Query: 386 FSSLLLTGNEFT-TVVRGHQQRQKHNKAAAYRALFSKLILRG 508 + S L T F T R +K + AAAY+ALF KL L G Sbjct: 258 YLSYLWTSGPFRDTYTRFGYDPRKDSNAAAYQALFFKLKLNG 299 >SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 638 Score = 25.8 bits (54), Expect = 6.8 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = -3 Query: 398 TTKKSEFSHGTRGTQGVLIPSVTNDTNEIVSDS 300 TT + + +H T G+L+ S D V DS Sbjct: 485 TTTQKDINHATISNSGILVTSSGTDNQTFVWDS 517 >SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 855 Score = 25.4 bits (53), Expect = 9.0 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Frame = -3 Query: 416 TRFPSTTTKKSEFSHGTRGTQ-GVLIPSVTNDTNEIVSDSMTNIEN 282 T FPS+ T F HG+ G +PS + N D ++ N Sbjct: 297 TLFPSSATNSFSFEHGSAGFPIPGSVPSTSYHANTASEDGFSSSYN 342 >SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type transcription factor Ams2|Schizosaccharomyces pombe|chr 3|||Manual Length = 697 Score = 25.4 bits (53), Expect = 9.0 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 598 RITTAPLVPPRPPTLWDEPLLSV 530 RI ++P+V P P T + EPL + Sbjct: 488 RIQSSPIVAPTPDTSFREPLSEI 510 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,720,868 Number of Sequences: 5004 Number of extensions: 53773 Number of successful extensions: 167 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 167 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 369323696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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