Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1564
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0749 + 5599238-5600128 32 0.58
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524... 29 3.1
12_02_0115 - 13809015-13809068,13809530-13809637,13811004-138111... 29 4.1
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397... 28 7.1
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 9.4
08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951 28 9.4
04_04_0262 - 24024451-24025080,24025421-24026320 28 9.4
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 28 9.4
01_01_0458 + 3396508-3396636,3396752-3396807,3397451-3397565,339... 28 9.4
>06_01_0749 + 5599238-5600128
Length = 296
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2
Query: 600 SALPLHPSSPRAPRRSGMS 544
+ALPLHPSSPR+ +RS S
Sbjct: 20 AALPLHPSSPRSKKRSSSS 38
>02_05_0668 +
30749474-30750007,30750818-30751403,30751405-30752497,
30753105-30753255,30754055-30754870
Length = 1059
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 132 YQISS*SDVLKGVKIMFKDSVTNIHTSEANKSVFKCLL 245
Y++ SD+ G + +F D + I ++ AN+ KC L
Sbjct: 515 YEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCNL 552
>12_02_0115 -
13809015-13809068,13809530-13809637,13811004-13811114,
13811891-13811988,13813448-13813563,13814201-13814433,
13816015-13816212,13820448-13820572,13820700-13820787,
13822227-13822332,13823243-13823331,13823427-13823570,
13824174-13824266,13824442-13824508,13825251-13825387,
13825471-13825566,13826322-13826600
Length = 713
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 461 KAAAYRALFSKLILRGHAIEFTYHREERLIPERRGARGDEGCSGNAERMYRVT 619
+A A L + L+L G + Y E ++ + G RGD+G GN + VT
Sbjct: 13 RALALALLLAILLLLGCSAAAAYAGAEGVLRQVVGRRGDDGGGGNFFEPFNVT 65
>12_02_0912 -
24238659-24238897,24239353-24239462,24239548-24239741,
24239839-24239907,24240096-24240282,24240683-24240969,
24241593-24241880
Length = 457
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 499 FKRTRHRVH-VPPRGEAHPRASGGAGGRGVQW 591
F+R R H P G HP + G GG V W
Sbjct: 19 FRRIRRHPHPAPAAGFFHPYTNDGGGGERVLW 50
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 649 IMLSIKYSRICYTIHPLRITTAPLVPPRPPTLWDEPLLSVVR 524
++LS + +I HPL +VPP P TL + P+ V R
Sbjct: 163 LLLSFTFLQIFQ--HPLNDKIPKMVPPSPVTLLEPPVAGVKR 202
>08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951
Length = 189
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 514 HRVHVPPRGEAHPRASGGAGGRGVQW 591
H+ P + H + GG GGRG W
Sbjct: 152 HQERKPAEKDRHRSSGGGGGGRGRNW 177
>04_04_0262 - 24024451-24025080,24025421-24026320
Length = 509
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 378 ELTFLRCC*RETSLRQSSVDISNARNTTKPLRTAH 482
EL +LR +ET + + R TT+P RTAH
Sbjct: 352 ELHYLRLVIKETLRLHPAAPLLVPRETTEPFRTAH 386
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 521 FTYHREERLIPERRGARGDEGC-SGNAERM 607
FT+ R R++ E G+R D C S NAE +
Sbjct: 751 FTFTRPRRIVEEASGSRRDAACPSRNAENV 780
>01_01_0458 +
3396508-3396636,3396752-3396807,3397451-3397565,
3397671-3397787,3397908-3398095,3398198-3398257,
3398365-3398524,3398903-3398971,3399085-3399186
Length = 331
Score = 27.9 bits (59), Expect = 9.4
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +1
Query: 373 CENSLFFVVVDGKRVYDSRPWTSA--TPETQQSRCVPRTIFKTNFKRTRHR-VHVPPRGE 543
C+ L + VD K V D T T + ++S VPR I K +RTR R + +
Sbjct: 131 CKFELHTLPVDAKAVADGDTITVYIDTADPRESGNVPREIQKAAAERTRARAARDYQKAD 190
Query: 544 AHPRASGGAGGRGVQW*CGEDVSCNKF 624
+ AG R V GE+V K+
Sbjct: 191 GLQKMIADAGYRQVPNARGEEVLAKKY 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,254,265
Number of Sequences: 37544
Number of extensions: 365421
Number of successful extensions: 1646
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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