Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1564
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)                   29   5.5  
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_1019| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)               28   9.5  

>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 424  SRPWTSATPETQQSRCVPRT---IFKTNFKRTRHRVHVPPRGEAHPRA 558
            S+P + + P+ QQ+R  PRT    F  N   +     +PP   +H  A
Sbjct: 1183 SKPLSGSPPKIQQARLTPRTPSSAFSQNHSTSYPAFKLPPANSSHQAA 1230


>SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)
          Length = 576

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 374 ARTHFSSLLLTGNEFTTVVRGHQQRQKHNKAAAYRALFSKLILRGHAIEFTYHREERLIP 553
           +R+HF+SL+ TG           Q++KH     Y       + + H I F  HR+ +  P
Sbjct: 100 SRSHFNSLIYTGEV---------QKEKHRLYLYYAEGHYDYLTKVHRICFENHRKVKSHP 150

Query: 554 ERRG 565
           + RG
Sbjct: 151 DGRG 154


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 588 LHPSSPRAPRRSGMSLSSRWYVNSMACP 505
           L PSSP   R + +S+  R+Y NS+  P
Sbjct: 380 LVPSSPTVSRTTALSMVPRFYANSLPFP 407


>SB_1019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 233 KYAFISFRRMYVSN*IFEHDF--HPLQNVGLTRNL 135
           + AF   RR+Y  N +FE +F   PL+N G T  L
Sbjct: 75  RLAFRRVRRVYEGNFLFEEEFGGSPLKNQGFTDTL 109


>SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)
          Length = 414

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 380 THFSSLLLTGNEFT-TVVRGHQQRQKHNKAAAYRALFSKLILRGHAIEFTYHREERLI 550
           T F + L T   F  T++  H +RQKH         F++  L   +I F Y    RLI
Sbjct: 12  TTFETRLSTLTRFPRTLLGSHSKRQKHYNDTLQEFYFNRHRLAFESILFYYQSNGRLI 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,011,957
Number of Sequences: 59808
Number of extensions: 397727
Number of successful extensions: 1307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)