Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1564
         (769 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1967|AAF50051.1|  566|Drosophila melanogaster CG11711-P...    29   1.0  
BT001864-1|AAN71631.1|  550|Drosophila melanogaster RH70633p pro...    29   1.0  
AY118753-1|AAM50613.1|  415|Drosophila melanogaster GH08043p pro...    29   9.3  
AE014297-685|AAF54177.1|  415|Drosophila melanogaster CG3223-PA ...    29   9.3  

>AE014296-1967|AAF50051.1|  566|Drosophila melanogaster CG11711-PD,
           isoform D protein.
          Length = 566

 Score = 29.5 bits (63), Expect(2) = 1.0
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +1

Query: 403 DGKRVYDSRPWTSATPETQQSRCVPRTIFKTNFKRTRHRVHVPPRGEAHPRASGGAGGRG 582
           DG       P T++TP    S     + F   F     R H+P R      A+G  GG+G
Sbjct: 33  DGSSTAPQTP-TASTPRPSSSHSSLSSTFAATFLHASSR-HIPGRAVPRQNANGQNGGKG 90



 Score = 21.0 bits (42), Expect(2) = 1.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 556 ASGGAGGRGVQ 588
           ASGG GG G Q
Sbjct: 107 ASGGTGGTGAQ 117


>BT001864-1|AAN71631.1|  550|Drosophila melanogaster RH70633p
           protein.
          Length = 550

 Score = 29.5 bits (63), Expect(2) = 1.0
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +1

Query: 403 DGKRVYDSRPWTSATPETQQSRCVPRTIFKTNFKRTRHRVHVPPRGEAHPRASGGAGGRG 582
           DG       P T++TP    S     + F   F     R H+P R      A+G  GG+G
Sbjct: 33  DGSSTAPQTP-TASTPRPSSSHSSLSSAFAATFLHASSR-HIPGRAVPRQNANGQNGGKG 90



 Score = 21.0 bits (42), Expect(2) = 1.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 556 ASGGAGGRGVQ 588
           ASGG GG G Q
Sbjct: 107 ASGGTGGTGAQ 117


>AY118753-1|AAM50613.1|  415|Drosophila melanogaster GH08043p
           protein.
          Length = 415

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 176 DFHPLQNVGLTRNLVYLLGPMT 111
           D HPL N+ LTR++ YL   +T
Sbjct: 14  DVHPLHNIDLTRDVAYLKAVVT 35


>AE014297-685|AAF54177.1|  415|Drosophila melanogaster CG3223-PA
           protein.
          Length = 415

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 176 DFHPLQNVGLTRNLVYLLGPMT 111
           D HPL N+ LTR++ YL   +T
Sbjct: 14  DVHPLHNIDLTRDVAYLKAVVT 35


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,182,090
Number of Sequences: 53049
Number of extensions: 606849
Number of successful extensions: 2369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2358
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)