Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1564
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical...    31   1.2  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical
           protein Y116A8C.40 protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 193 LLTYIRLKLIKAYLNVFYRLVCYISRFRGSFSMLVMLSETI 315
           +LTY+ L      L V+  L+CYIS F   +S+  M++E I
Sbjct: 18  VLTYLILSKSPKKLGVYKYLMCYISLFEVYYSIWDMMTEPI 58


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 364 LVPCENSLFF--VVVDGKRVYDSRPWTSATPETQQSRCVPRTIFKTNFKRTRHRVH 525
           L P E   +     V  +  Y+   W SA   T + R VPR +F+ N      ++H
Sbjct: 87  LTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIH 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,100
Number of Sequences: 27780
Number of extensions: 304040
Number of successful extensions: 1073
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)