Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1564
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   1.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 364 LVPCENSLFFVVVDGKRVYDSRPWTSATPETQQSRCVPRTI 486
           L  C NS    +V G      R  TSA P T ++R  P ++
Sbjct: 303 LFACTNSCMNPIVYGAFNIRDRNKTSARPTTIETRVTPLSL 343


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 232 LNVFYRLVCYISRFRGSFSMLVMLSETISFVSFV 333
           L ++ RL CY  +   S   +  L +T    SFV
Sbjct: 209 LGIYCRLYCYAQKHVKSIRAVTKLPDTSMAKSFV 242


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 612 RYILSALPLHPSSPRAPRRSGMSLSSRWYVNSMAC-PLKISFENSARYAAALLCF 451
           RY+    P+      +PRR+ + +++ W ++ + C P  + +++   + A  + F
Sbjct: 163 RYLAVTRPVSYPQIMSPRRARLLVATVWILSFVICFPPLVGWKDKRSHPAYNMTF 217


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 679 STIHSYLVKIIMLSIKYSRICYTIHPLRITT 587
           S + SY+  + +++    R     HPLR+ T
Sbjct: 121 SEMSSYVSVLTIVAFSMERYLAICHPLRVYT 151


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 611 DTSSPHYHCTP 579
           D SSPH+H +P
Sbjct: 625 DGSSPHFHQSP 635


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 469 CVPRTIFKTNFKRTRHRVHVPPRGEAHP 552
           CV R +        R  VHVPPR    P
Sbjct: 685 CVARNLAAEVSHTQRLVVHVPPRWIVEP 712


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,106
Number of Sequences: 438
Number of extensions: 3588
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)