Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1564
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    29   3.4  
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein...    29   4.5  
At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein si...    29   4.5  
At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein si...    29   4.5  
At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein si...    29   4.5  
At2g37590.1 68415.m04612 Dof-type zinc finger domain-containing ...    28   6.0  
At5g57345.1 68418.m07164 expressed protein                             28   7.9  

>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/84 (21%), Positives = 42/84 (50%)
 Frame = +2

Query: 365 SSHARTHFSSLLLTGNEFTTVVRGHQQRQKHNKAAAYRALFSKLILRGHAIEFTYHREER 544
           S   R   +S+L    EF+ ++  HQ++ + +  + + A   + I R  ++E +  ++E+
Sbjct: 735 SERKREEMNSVLARNIEFSQLIIDHQRKLRESSESLHAA---EEISRKLSMEVSVLKQEK 791

Query: 545 LIPERRGARGDEGCSGNAERMYRV 616
            +      R  +  S  ++R+YR+
Sbjct: 792 ELLSNAEKRASDEVSALSQRVYRL 815


>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
           contains Pfam profile PF00098: Zinc knuckle
          Length = 200

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 499 FKRTRHRVHVPPRGEAHPRASGGAGGRGVQW*CGED 606
           +K T   +HV  R  +  R S   G +G  W CGED
Sbjct: 133 YKETAEELHVRRRSVSRDR-SKSKGEKGACWICGED 167


>At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 566 PPDALG*ASPLGG 528
           PPDALG ASPLGG
Sbjct: 460 PPDALGPASPLGG 472


>At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 566 PPDALG*ASPLGG 528
           PPDALG ASPLGG
Sbjct: 460 PPDALGPASPLGG 472


>At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 566 PPDALG*ASPLGG 528
           PPDALG ASPLGG
Sbjct: 460 PPDALGPASPLGG 472


>At2g37590.1 68415.m04612 Dof-type zinc finger domain-containing
           protein 
          Length = 330

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +1

Query: 421 DSRPWTSATPETQQSRCVPRTIFKTNFKRTRHRVHVPPRGEAHPRASGGAGGRG 582
           DS  W  A P          +    +  R + +    P+ + HP  SGG GG G
Sbjct: 11  DSSNWQQAPPSNYNHDGTGASANGGHVLRPQLQPQQQPQQQPHPNGSGGGGGGG 64


>At5g57345.1 68418.m07164 expressed protein
          Length = 188

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 227 AFISFRRMYVSN*I-FEHDFHPLQNVGLTR 141
           A  S R+ ++SN   F+H F P  NV LTR
Sbjct: 5   AIASSRQSFLSNNFSFQHSFKPKSNVNLTR 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,857
Number of Sequences: 28952
Number of extensions: 278499
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)