Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1563
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   2.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.7  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    26   6.1  
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr...    26   6.1  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +3

Query: 246 LTKIFIYTQIKDFKSINK 299
           L+KI++Y++I DF+S+ K
Sbjct: 432 LSKIYLYSEISDFESVEK 449


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +3

Query: 366 CHNLLVHNSYITRNFLRFFPTCM---QNGKRHTHF 461
           C   L H  ++ R+F+R  P C+      K H H+
Sbjct: 693 CEYCLAHQPFLLRSFIRSLPDCLFINTQVKHHEHW 727


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 273 IKDFKSINKILEYRF*NTADDRVNLFYLSLSCHNLLVHNSYITRN 407
           +KD +  N +L+    N   ++ NL+Y+S +  NLL H  Y   N
Sbjct: 300 VKDLE--NSLLQSNIRNVGYEKKNLYYISSAFSNLL-HCRYFNCN 341


>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 344 VDSIISSILKSIFQNFIDRF 285
           +D IIS+IL S+F +F D+F
Sbjct: 2   MDLIISTILLSLFIHFFDKF 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,095
Number of Sequences: 5004
Number of extensions: 53283
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)