Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1563
         (714 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040517-1|AAH40517.1|  118|Homo sapiens PGAP1 protein protein.        33   0.77 

>BC040517-1|AAH40517.1|  118|Homo sapiens PGAP1 protein protein.
          Length = 118

 Score = 33.5 bits (73), Expect = 0.77
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 17  WGAVENKTKKFYLFIYLLSTSKAILE*FRNIALLQANLWCDHMRNPFVSSFFSVIATQIK 196
           +G  ENK    Y+F Y    S A+ + + +   L   +WC  ++   V +FF +I    K
Sbjct: 30  FGFEENKCSMSYMFEYPEYQSSAVPKTWVSTDHLSI-VWCKQLQLTTVRAFFDLIDADTK 88

Query: 197 QF*HKQRRKNTSKYFYF 247
           Q     ++K +  Y +F
Sbjct: 89  QITQNSKKKLSVLYHHF 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,077,439
Number of Sequences: 237096
Number of extensions: 1483327
Number of successful extensions: 2000
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2000
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)