Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1563
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 113 LLQANLWCDHMRNPFVSSFFSVIATQ 190
           +L+ N+W   +   FV+SF  VIA Q
Sbjct: 2   MLRCNIWTLAVNVLFVNSFLFVIAAQ 27


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 113 LLQANLWCDHMRNPFVSSFFSVIATQ 190
           +L+ N+W   +   FV+SF  VIA Q
Sbjct: 2   MLRCNIWTLAVNVLFVNSFLFVIAAQ 27


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 113 LLQANLWCDHMRNPFVSSFFSVIATQ 190
           +L+ N+W   +   FV+SF  VIA Q
Sbjct: 2   MLRCNIWTLAVNVLFVNSFLFVIAAQ 27


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 634 NCILKIYVTYFTCHHSGII 578
           +CI +I  +   CHH+G++
Sbjct: 13  HCIQQILESVHHCHHNGVV 31


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +1

Query: 352 IYLFPVT--IY*YIILISHGIFYV 417
           I L PVT  +Y Y  L+SHG++YV
Sbjct: 259 IALSPVTNNLY-YSPLLSHGLYYV 281


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 342 NLFYLSLSCHNL 377
           NL+Y +LS HNL
Sbjct: 262 NLYYSALSSHNL 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,313
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)