Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1561
         (829 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9BMN0 Cluster: JH-inducible protein; n=1; Galleria mel...    77   5e-13
UniRef50_UPI0000D555A2 Cluster: PREDICTED: similar to CG13315-PA...    46   9e-04
UniRef50_Q9VSU3 Cluster: CG13315-PA; n=3; Sophophora|Rep: CG1331...    46   0.001
UniRef50_UPI0000DB78C0 Cluster: PREDICTED: similar to Tubulin al...    37   0.71 
UniRef50_Q4Q0H9 Cluster: Mkiaa0324 protein-like protein; n=3; Le...    34   3.8  

>UniRef50_Q9BMN0 Cluster: JH-inducible protein; n=1; Galleria
           mellonella|Rep: JH-inducible protein - Galleria
           mellonella (Wax moth)
          Length = 78

 Score = 77.0 bits (181), Expect = 5e-13
 Identities = 40/65 (61%), Positives = 43/65 (66%)
 Frame = +1

Query: 31  MDKRKLIGSATRYIAGRHAVQTVYWRRSAXXXXXXXXXXXXXXXXXXXXPNKVDSAEMFA 210
           MDKR+LIGSATRYIAGRHAVQTVYWR+SA                    PN+VD AEMF 
Sbjct: 1   MDKRQLIGSATRYIAGRHAVQTVYWRKSA-AANKGLLKTKTTFFGKNEGPNRVDPAEMFT 59

Query: 211 RVRER 225
           RVRER
Sbjct: 60  RVRER 64


>UniRef50_UPI0000D555A2 Cluster: PREDICTED: similar to CG13315-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG13315-PA - Tribolium castaneum
          Length = 65

 Score = 46.4 bits (105), Expect = 9e-04
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = +1

Query: 31  MDKRKLIGSATRYIAGRHAVQTVYWR 108
           M  + L+G+ATRYIAGR+AVQTVYWR
Sbjct: 1   MQGKNLVGAATRYIAGRNAVQTVYWR 26


>UniRef50_Q9VSU3 Cluster: CG13315-PA; n=3; Sophophora|Rep:
           CG13315-PA - Drosophila melanogaster (Fruit fly)
          Length = 69

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = +1

Query: 46  LIGSATRYIAGRHAVQTVYWRRSA 117
           LIG+ TRYIAGR+AVQTVYWR SA
Sbjct: 9   LIGATTRYIAGRNAVQTVYWRTSA 32


>UniRef50_UPI0000DB78C0 Cluster: PREDICTED: similar to Tubulin
           alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
           M-alpha-6); n=1; Apis mellifera|Rep: PREDICTED: similar
           to Tubulin alpha-6 chain (Alpha-tubulin 6)
           (Alpha-tubulin isotype M-alpha-6) - Apis mellifera
          Length = 542

 Score = 36.7 bits (81), Expect = 0.71
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +1

Query: 46  LIGSATRYIAGRHAVQTVYWRRSA 117
           LIG A  Y+AG+ AV+TVYWR ++
Sbjct: 473 LIGGAVSYVAGKQAVRTVYWRTAS 496


>UniRef50_Q4Q0H9 Cluster: Mkiaa0324 protein-like protein; n=3;
           Leishmania|Rep: Mkiaa0324 protein-like protein -
           Leishmania major
          Length = 500

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = +2

Query: 8   TGRISRTKWTKES*LAALRDTSPAVTRSKRYTGADRRKTAR---AC*RPPKRPSSAKTRV 178
           TGR  +   +++  + A R       R  R   A + K AR   A  R PKRP+S K R 
Sbjct: 208 TGRSRKAAKSRKPPVTAARAKKAQAARPSRSAAAQKLKRARRMRAARRVPKRPASVKVRR 267

Query: 179 QTKLTRPRCSQGSV-KDTPKYSEPNNLKKAVIVQ 277
              L   R S  +V    PK    +  +KA  ++
Sbjct: 268 ARHLAAKRSSPKTVTASKPKARTTHAARKAAALK 301


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,920,929
Number of Sequences: 1657284
Number of extensions: 16039552
Number of successful extensions: 35188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35164
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)